Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48G10A.1
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Query: Y48G10A.1 CE25312 putative esterase status:Partially_confirmed TR:Q9TVN2 protein_id:CAB63414.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Esterase Putative esterase 204.7 1.4e-57 1
Hfq Host factor Hfq 6.0 3 1
LolA Outer membrane lipoprotein carrier protein L 3.7 7.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Hfq 1/1 16 25 .. 49 58 .. 6.0 3
LolA 1/1 85 93 .. 193 201 .] 3.7 7.9
Esterase 1/1 13 272 .. 1 308 [] 204.7 1.4e-57
Alignments of top-scoring domains:
Hfq: domain 1 of 1, from 16 to 25: score 6.0, E = 3
*->qLiYKHAIST<-*
q++YKHA ST
Y48G10A.1 16 QFVYKHASST 25
LolA: domain 1 of 1, from 85 to 93: score 3.7, E = 7.9
*->PKGVDVidq<-*
P+GVDV+++
Y48G10A.1 85 PRGVDVDGD 93
Esterase: domain 1 of 1, from 13 to 272: score 204.7, E = 1.4e-57
*->ggpveylrhnSeslgrerkvqvyLPpdYyppgrkyPvlylLDGLrAq
g++ +++h+S+++++e+++ vy P++ +p +k+P+l++L+GL
Y48G10A.1 13 KGRQFVYKHASSTTQCEMTFGVYIPDH--KPDEKLPALFYLSGL--- 54
ddatgwfqngpakealdrliaegeippviiVgvPaG.dessfysdwdlgq
t++ n+ k+++++ ++++++++v ++++P+G d++ + ++wd+g
Y48G10A.1 55 ---TCTHANFMEKSGFQQFASKHRLVVVHPDTSPRGvDVDGDSESWDFGK 101
GarfylrategpgaeayeMYtfltqELlPlldanfptspdgdrralaGqS
Ga+fy++at + +a++y+MY+++ +ELl + + + + ++ ++G+S
Y48G10A.1 102 GAGFYVNATVEKWAKNYRMYDYIVKELLEEVVPSVAPIDLAK-IGIFGHS 150
mGGlgALylAlkyPerFgsVssfSPivnPssafgpvaIgaaLsdAGGydA
mGG+gAL ++l++ +F+s+s+f+Pi+nP
Y48G10A.1 151 MGGHGALTIGLRNSSKFQSISAFAPICNPI-------------------- 180
gsmWGppafsaylg.eddpaWqegdpvllaqalsasnralrIyldvGtre
++WG++a ++ylg+ed+ +W ++d+ + ++s++ I++d+G +
Y48G10A.1 181 TVPWGQKALTGYLGdEDKSTWNQYDASEVLK--AYSGPKREILVDQGAAD 228
dflgdqlpveildelapnrelaeqlaargvgghdheypfpqnGgHdwayd
fl+ ql++e l ++ + ++ r + +dh+y+
Y48G10A.1 229 NFLA-QLKPETLK-----SKENAEIVVRMQAEFDHSYY------------ 260
mWraaLiaalidl<-*
++a+++a++ +
Y48G10A.1 261 -FIASFMADHFEH 272