Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48G1A.3
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Query: Y48G1A.3 CE26999 status:Partially_confirmed TR:Q9N3Q8 protein_id:AAF60684.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-MYND MYND finger 37.6 4.2e-11 1
ank Ankyrin repeat 31.0 4.8e-07 2
zf-HIT HIT zinc finger 14.3 0.044 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ank 1/2 40 72 .. 1 33 [] 11.0 0.26
ank 2/2 74 106 .. 1 33 [] 20.1 0.00063
zf-HIT 1/1 319 347 .. 3 33 .] 14.3 0.044
zf-MYND 1/1 321 357 .. 1 43 [] 37.6 4.2e-11
Alignments of top-scoring domains:
ank: domain 1 of 2, from 40 to 72: score 11.0, E = 0.26
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
G++ L Aa rgnl +v+ ++ d+n ++d
Y48G1A.3 40 SGMSVLAAAAYRGNLTLVEKAIELKCDVNDKTD 72
ank: domain 2 of 2, from 74 to 106: score 20.1, E = 0.00063
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+TPL+ Aa++g +v++lL++ GA +++
Y48G1A.3 74 TLYTPLMFAALSGKQDVCRLLMDSGARMYLVNG 106
zf-HIT: domain 1 of 1, from 319 to 347: score 14.3, E = 0.044
*->efCvvPvCegnp.akYkCprCgvpYCSLrCyk<-*
+fC+ vC g+p+ak +C C++ YCS +C+k
Y48G1A.3 319 QFCS--VC-GHPgAKKRCTQCKLAYCSQECQK 347
zf-MYND: domain 1 of 1, from 321 to 357: score 37.6, E = 4.2e-11
*->CanCgkeatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
C +Cg +k k+C +Ck +YCS+eCQ+ dW+ Hk+ C
Y48G1A.3 321 CSVCGHPGAK----KRCTQCK-LAYCSQECQKFDWP-IHKKVC 357