hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y48G1A.6
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Query:  Y48G1A.6  CE27002    status:Partially_confirmed TR:Q9N3Q7 protein_id:AAF60679.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
mbt      mbt repeat                                     108.8    1.1e-29   4
GYR      GYR motif                                        7.3        2.8   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GYR        1/1      29    46 ..     1    18 []     7.3      2.8
mbt        1/4     130   164 ..    19    56 ..     1.7       47
mbt        2/4     247   336 ..     1    77 []    44.4    3e-11
mbt        3/4     354   419 ..     1    65 [.     8.2     0.63
mbt        4/4     467   520 ..     1    59 [.    54.9    3e-14

Alignments of top-scoring domains:
GYR: domain 1 of 1, from 29 to 46: score 7.3, E = 2.8
                   *->ddGYrYktvrrlklRaRr<-*
                      +  YrY t  rl +R+R
    Y48G1A.6    29    EAEYRYFTEERLFYRRRN    46

mbt: domain 1 of 4, from 130 to 164: score 1.7, E = 47
                   *->VveVvGrrylllrfDGwdsdypsDfWcdadSpdIhPvG<-*
                      V++V+G + + + f G  + +++ +W ++ S dI+ +G
    Y48G1A.6   130    VTAVCGFY-VAIKFVG--ELNRRPCWFHMLSEDIFDIG    164

mbt: domain 2 of 4, from 247 to 336: score 44.4, E = 3e-11
                   *->MKLEAvDprnpslicvATVveVvGrry.lllrfDGwdsdyp......
                       + E +++ +p++i+vA++ +++Grr  ++++  ++++d p+ + ++
    Y48G1A.6   247    -RVELLNYLEPTEIRVARILRILGRRLmVMVTAQDYPEDLPsveakd 292

                   .......sDfWcdadSpdIhPvGWCeknGhpLqpPpgyrektfs<-*
                   ++ ++++ +fW+d+ S++++PvG++  nG   ++ +gy e++ +
    Y48G1A.6   293 rqvqhenVEFWVDESSFFLFPVGFAMINGLRTKATEGYLEHSRR    336

mbt: domain 3 of 4, from 354 to 419: score 8.2, E = 0.63
                   *->MKLEAvDp..rnpslicvATVveVvGrry.lllrfDGwdsdypsDfW
                       K E +Dp +   +++cvAT+ +++     l ++ D  +sd+   f
    Y48G1A.6   354    -KFELLDPlsDLRQSFCVATIRKICKTPGfLIISPDETESDD-ESFP 398

                   cdadSpdIhPvGWCeknGhpL<-*
                   +++d+++ hPvG +ek G +L
    Y48G1A.6   399 IHIDNHFMHPVGYAEKFGIKL    419

mbt: domain 4 of 4, from 467 to 520: score 54.9, E = 3e-14
                   *->MKLEAvDprnpslicvATVveVvGrrylllrfDGwdsdypsDfWcda
                        LEAv +++ + i +A+V eV+Gr  +l++f Gwds++     +d+
    Y48G1A.6   467    --LEAVGQNETYWISPASVEEVHGRT-VLIEFQGWDSEF--SELYDM 508

                   dSpdIhPvGWCe<-*
                   dS+d+ P+GWCe
    Y48G1A.6   509 DSHDLLPAGWCE    520

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