hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y48G1C.5
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Query:  Y48G1C.5  CE31378    status:Partially_confirmed TR:Q9BL78 protein_id:AAK29895.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase              108.6    8.2e-30   1
WSN           Domain of unknown function                 29.3    1.2e-06   1
Lipoprotein_5 Transferrin binding protein-like solute     2.0        5.2   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
WSN             1/1      46    81 ..     1    36 [.    29.3  1.2e-06
Lipoprotein_5   1/1     619   628 ..   778   788 .]     2.0      5.2
Y_phosphatase   1/1     545   690 ..    60   240 ..   108.6  8.2e-30

Alignments of top-scoring domains:
WSN: domain 1 of 1, from 46 to 81: score 29.3, E = 1.2e-06
                   *->skLqtvienlsilaRVtNAIsLqaglingsiksddv<-*
                      ++L t++e+l+  +R++NA +Lq++l+ g+i+s ++
    Y48G1C.5    46    DNLITAVERLQFASRLINAMYLQQELTKGTIPSMNL    81

Lipoprotein_5: domain 1 of 1, from 619 to 628: score 2.0, E = 5.2
                   *->FGAKKrQqevk<-*
                      FG+K r qev+
    Y48G1C.5   619    FGKK-RTQEVT    628

Y_phosphatase: domain 1 of 1, from 545 to 690: score 108.6, E = 8.2e-30
                   *->ieDFWrMvweqkvtvIVMLtklvEkgre....eeKtCaqYWPeegge
                      i+ FW  v  +k ++IVML+++ E +   + +++  C++Y+P+   e
    Y48G1C.5   545    IAAFWESVKLNKPSTIVMLCDFAEIDHFiganKVN-CDRYFPT---E 587

                   eggsltyGditVtlvseekkddddytvRtleltn.gdeskneakqeklkg
                    +++l   d+t+t+++  +  ++   +R+l lt+++             +
    Y48G1C.5   588 LDEKLILADLTITCTKSIS--KPLLKTRQLLLTFgK-------------K 622

                   etrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqenesgeaspds
                    t++Vthy+ytgWP+h+ P++ +  +  +l+ v  s +
    Y48G1C.5   623 RTQEVTHYQYTGWPEHMGPKD-AEEIRYLLKLVTDSER------------ 659

                   gprSsctgPivVHCSAGiGRTGtfiaidillqqleaegv<-*
                           P+ V+C  G GR+++f++i+ l q + ++++
    Y48G1C.5   660 --------PVFVVCNTGGGRSAAFVLIESLFQAINTSET    690

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