Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48G8AL.8a
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Query: Y48G8AL.8a CE22195 status:Confirmed TR:Q9BL19 protein_id:AAK29902.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_L22 Ribosomal protein L22p/L17e 202.0 9.2e-57 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L22 1/1 19 154 .. 1 136 [] 202.0 9.2e-57
Alignments of top-scoring domains:
Ribosomal_L22: domain 1 of 1, from 19 to 154: score 202.0, E = 9.2e-57
*->AvgkyiRiSpkKvRrvadqIRGksveeAlmiLefmidhkqaiPFrrf
A+g+ +R+++k++ + a + RG++++ A++ L+++ +hk ++PFrrf
Y48G8AL.8a 19 ARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
NsGVGrkaqvkgfd..aGRwPyKAskpIlKLLkSAaANYAahnkGldkdn
+G+Gr aq k + +++GRwP K++ + l+LLk+A++N a++kGld+d
Y48G8AL.8a 66 HGGIGRAAQTKQWNttQGRWPVKSADFLLDLLKNAESN--AEYKGLDVDH 113
LyIskaeVNeGptlKRfrPRAqGRaypIkKrTCHITivvse<-*
L+I+++ V ++ +l+R+++RA+GR++p+++++CHI++++ e
Y48G8AL.8a 114 LVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILAE 154