Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48G8AL.14
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Query: Y48G8AL.14 CE30461 locus:apt-8 sigma-adaptin subunit of adaptor protein complex 3 (AP-3) status:Partially_confirmed TR:Q8T874 protein_id:
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Clat_adaptor_s Clathrin adaptor complex small chain 227.9 1.5e-64 1
RNase_HII Ribonuclease HII 4.1 7.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RNase_HII 1/1 11 39 .. 198 229 .] 4.1 7.6
Clat_adaptor_s 1/1 1 148 [. 1 164 [] 227.9 1.5e-64
Alignments of top-scoring domains:
RNase_HII: domain 1 of 1, from 11 to 39: score 4.1, E = 7.6
*->ptDphteallklgatpvfGwlpdlhRrsFktv<-*
+++p++ ++ ++++++ + ++R +F+ v
Y48G8AL.14 11 HGKPRLLKFYQHYPEE---KQQQIVRETFQLV 39
Clat_adaptor_s: domain 1 of 1, from 1 to 148: score 227.9, E = 1.5e-64
*->mikaiLifnrqGkpRLaKwYDtavddpekqKlieevyavvsaRdpKh
mikaiL n+ GkpRL K+Y ++++ ++q +++e ++vs Rd
Y48G8AL.14 1 MIKAILVINNHGKPRLLKFY-QHYPEEKQQQIVRETFQLVSKRDDN- 45
QssFLvtPPslllflE.sNfvEfrdeDlkviYKrYAsLYFvvivdPdqdn
+++flE+ ++ ++d ++iY+ YA+LYF+++vd + ++
Y48G8AL.14 46 ----------VCNFLEgGTLIDGND--YRLIYRHYATLYFIFCVD-SSES 82
ELiiLelIhrFVEsLDryFgKNVCELDLvFNFekvylilDEmvmGDGeIl
EL+iL+lI++FVE+LDr+F NVCELDL+F v+ il E+vmG G++l
Y48G8AL.14 83 ELGILDLIQVFVETLDRCFE-NVCELDLIFHVDRVHHILGEIVMG-GMVL 130
EtskkeVlkrvalldele<-*
Et+ +e+l r+ + d+ +
Y48G8AL.14 131 ETNMNEILQRIQEQDKIQ 148