Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y49E10.16
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Query: Y49E10.16 CE22231 status:Partially_confirmed TR:Q9XTU5 protein_id:CAB11552.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Lipase_3 Lipase (class 3) 197.4 2.3e-58 1
STT3 Oligosaccharyl transferase STT3 subunit 2.1 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
STT3 1/1 1 18 [. 1 18 [. 2.1 6.9
Lipase_3 1/1 122 264 .. 1 175 [] 197.4 2.3e-58
Alignments of top-scoring domains:
STT3: domain 1 of 1, from 1 to 18: score 2.1, E = 6.9
*->llkvvifaliagvaifsr<-*
+lk+++f++i+g+a++++
Y49E10.16 1 MLKLIGFLIILGLATADK 18
Lipase_3: domain 1 of 1, from 122 to 264: score 197.4, E = 2.3e-58
*->rrdIvvafRGTltllellddlliflttdvtpfefdgninveddqddp
++I ++fRGT + +l +++l+f +++++ f
Y49E10.16 122 QKVIAMTFRGTEGAAQLSEEILDF---FHGKKAF------------- 152
vvkvhggfvdlyfhrgflslrdqvleevlrllekykkedypdykivvTGH
+ ++g v+ yf+++fl +++ +l+ +lr +ky+ ypdy+i+vTGH
Y49E10.16 153 --F-DSGSVFEYFYDAFLFQWNGGLQQDLRK-LKYQ---YPDYEIWVTGH 195
SLGGAlAsLaAadlvanglnngplqrdssrvtvvtfGsPRvGnkkgeFak
S+GGA+As+aA+++v+ g +++ ++++vt+G+PR+G++ +Fa
Y49E10.16 196 SMGGAIASIAASYIVKIGI------FTPDKIKLVTLGQPRTGDY--AFAT 237
avdelvpvksyRvvnrrDiVPrlPpalf<-*
++d+++p +s+R+v++rDi ++Pp +
Y49E10.16 238 WHDATFP-YSFRIVHHRDIAAHIPPMEG 264