Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y49E10.16
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Query:  Y49E10.16  CE22231    status:Partially_confirmed TR:Q9XTU5 protein_id:CAB11552.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Lipase_3 Lipase (class 3)                               197.4    2.3e-58   1
STT3     Oligosaccharyl transferase STT3 subunit          2.1        6.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
STT3       1/1       1    18 [.     1    18 [.     2.1      6.9
Lipase_3   1/1     122   264 ..     1   175 []   197.4  2.3e-58

Alignments of top-scoring domains:
STT3: domain 1 of 1, from 1 to 18: score 2.1, E = 6.9
                   *->llkvvifaliagvaifsr<-*
                      +lk+++f++i+g+a++++
   Y49E10.16     1    MLKLIGFLIILGLATADK    18

Lipase_3: domain 1 of 1, from 122 to 264: score 197.4, E = 2.3e-58
                   *->rrdIvvafRGTltllellddlliflttdvtpfefdgninveddqddp
                       ++I ++fRGT +  +l +++l+f   +++++ f
   Y49E10.16   122    QKVIAMTFRGTEGAAQLSEEILDF---FHGKKAF------------- 152

                   vvkvhggfvdlyfhrgflslrdqvleevlrllekykkedypdykivvTGH
                     + ++g v+ yf+++fl +++ +l+ +lr  +ky+   ypdy+i+vTGH
   Y49E10.16   153 --F-DSGSVFEYFYDAFLFQWNGGLQQDLRK-LKYQ---YPDYEIWVTGH 195

                   SLGGAlAsLaAadlvanglnngplqrdssrvtvvtfGsPRvGnkkgeFak
                   S+GGA+As+aA+++v+ g       +++ ++++vt+G+PR+G++  +Fa
   Y49E10.16   196 SMGGAIASIAASYIVKIGI------FTPDKIKLVTLGQPRTGDY--AFAT 237

                   avdelvpvksyRvvnrrDiVPrlPpalf<-*
                   ++d+++p +s+R+v++rDi  ++Pp  +
   Y49E10.16   238 WHDATFP-YSFRIVHHRDIAAHIPPMEG    264



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