hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y49F6B.9
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Query:  Y49F6B.9  CE25342    status:Partially_confirmed TR:Q9N4U3 protein_id:AAF60735.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
IBR      IBR domain                                      65.7    1.5e-18   1
Rer1     Rer1 family                                      8.1       0.33   1
CHORD    CHORD                                            7.8       0.85   1
zf-A20   A20-like zinc finger                             7.6        8.9   1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)            3.6        2.4   1
CopC     Copper resistance protein CopC                   3.6        7.4   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1      41    86 ..     1    48 [.     3.6      2.4
zf-A20     1/1     149   158 ..     1    10 [.     7.6      8.9
CHORD      1/1     148   161 ..     1    14 [.     7.8     0.85
IBR        1/1     110   176 ..     1    69 []    65.7  1.5e-18
CopC       1/1     241   250 ..   138   147 .]     3.6      7.4
Rer1       1/1     245   256 ..   176   188 .]     8.1     0.33

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 41 to 86: score 3.6, E = 2.4
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerWls.......
                      C +C+e        f+ ++ C+H      +Cr C++++ + +  +++
    Y49F6B.9    41    CELCCEMVPAGA--FCQLINCRHV-----YCRICIRKYMElsilgnr 80

                   gnttvkCp<-*
                    + +  Cp
    Y49F6B.9    81 VEIP--CP    86

zf-A20: domain 1 of 1, from 149 to 158: score 7.6, E = 8.9
                   *->plkCrkagCg<-*
                      ++kC+++gCg
    Y49F6B.9   149    RIKCQRPGCG    158

CHORD: domain 1 of 1, from 148 to 161: score 7.8, E = 0.85
                   *->gglkCkNkGCgqeF<-*
                        +kC+++GCg eF
    Y49F6B.9   148    PRIKCQRPGCGREF    161

IBR: domain 1 of 1, from 110 to 176: score 65.7, E = 1.5e-18
                   *->eKYerlllesyVesnpdlkwCPapdCsmivrvtdlsskeepssrrVe
                      +KYe+++ + ++    d++wCPapdC+++v v        ++++r++
    Y49F6B.9   110    SKYESFSIRMALCRIQDVRWCPAPDCGFAVIVPN-----GQKCPRIK 151

                   Csk..CgfeFCfnCkqewHgpl.sC<-*
                   C++++Cg+eFCf+C+  wH+++++C
    Y49F6B.9   152 CQRpgCGREFCFKCRKVWHEGTrTC    176

CopC: domain 1 of 1, from 241 to 250: score 3.6, E = 7.4
                   *->vtGsitFsVk<-*
                      +tG i+FsV+
    Y49F6B.9   241    ITGMIPFSVG    250

Rer1: domain 1 of 1, from 245 to 256: score 8.1, E = 0.33
                   *->iPFdiGKkkYggk<-*
                      iPF++GK++Y ++
    Y49F6B.9   245    IPFSVGKRVY-KR    256

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