Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y51A2D.5
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Query: Y51A2D.5 CE19202 Sugar (and other) transporters status:Partially_confirmed TR:Q9XXQ9 protein_id:CAA16405.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 384.5 1e-111 2
PSI Plexin repeat 8.7 0.17 1
IspA Intacellular septation protein A 3.9 7 1
Mre11_DNA_bind Mre11 DNA-binding presumed domain 3.0 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Mre11_DNA_bind 1/1 13 26 .. 1 14 [. 3.0 9.8
sugar_tr 1/2 29 377 .. 1 383 [. 300.9 1.6e-86
PSI 1/1 397 414 .. 1 22 [. 8.7 0.17
IspA 1/1 546 563 .. 168 185 .] 3.9 7
sugar_tr 2/2 470 575 .. 380 488 .] 88.0 1.3e-24
Alignments of top-scoring domains:
Mre11_DNA_bind: domain 1 of 1, from 13 to 26: score 3.0, E = 9.8
*->lIdPeenegkgFyV<-*
++ Pe+n++ gF+V
Y51A2D.5 13 RPRPEKNPKLGFFV 26
sugar_tr: domain 1 of 2, from 29 to 377: score 300.9, E = 1.6e-86
*->valvaalgGgflfGyDtgviggflalidflfrfglltssgalaslvg
+ a++gG flfGyDt v++++ + + ++l+ g
Y51A2D.5 29 LGSAAIIGG-FLFGYDTSVVSAAMLYVP---EAPGLKPMG------- 64
ystvltglvvsifflGrliGslfaGklgdrfGRkksllialvlfviGall
tv+ +vsi ++++G++f G+ +dr+GRk++++ ++++fv+Ga++
Y51A2D.5 65 --TVWKEVIVSITPGMAAVGAWFSGAGSDRYGRKPIIIGSTLIFVCGAVI 112
sgaapgytTiGlwafyllivGRvlvGlgvGgasvlvPmYisEiAPkalRG
++ a+ + ++++GR+++G g+G+as++vP+Y++E +P+++RG
Y51A2D.5 113 CAVAW--------TKIVMLIGRIFLGVGIGFASMVVPVYLGEASPTHVRG 154
algslyqlaitiGilvAaiiglglnktnndsalnswgWRiplglqlvpal
+l+s + ++i++G++vA+i+g +++ + + gWR++++++++pal
Y51A2D.5 155 TLVSAFAMMISFGQVVANIMGGVFSYWEPY----TIGWRLMFAFAGIPAL 200
llligllflPESPRwLvekgkleeArevLaklrgv.edvdqeiqeikael
+++++ flPE+PRwL+e+g++e+A+ vL+k+ g + + +++ ++ +
Y51A2D.5 201 IQFVCFIFLPETPRWLYENGHTEQAEQVLEKIYGGnTEWIEYELAEIKTY 250
eatvsee.kagkaswgelfrgrtrpkvrqrllmgvmlqafqQltGiNaif
+++ + +++k s ++r p v+++ ++g+mlqafqQl GiN i
Y51A2D.5 251 AEERQKQmEEEKKSGPVIWRILKTPHVLKACFIGSMLQAFQQLAGINTIL 300
YYsptifksvGvsdsvasllvtiivgvvNfvfTfvaLiflvDrfGRRpll
YY i +s+G+ + ++ +++++i+++ N + +f f+++++GRR+l+
Y51A2D.5 301 YYTADIIRSAGIENYHTIIWISVILSICNLIGPFAP-MFFIEKLGRRKLF 349
llGaagmaicflilgasigvallllnkpkdpsskaagi<-*
l+++ag + ++++g v +ll+ + +a +
Y51A2D.5 350 LFSCAGVVVSLVLIG----VSFLLVGND------SAPN 377
PSI: domain 1 of 1, from 397 to 414: score 8.7, E = 0.17
*->nCsqhrqsCssClsapdpmgCg<-*
+C ++ ++C sC++++ +Cg
Y51A2D.5 397 SCLML-SNCDSCVTSE---HCG 414
IspA: domain 1 of 1, from 546 to 563: score 3.9, E = 7
*->liFtliqgiylyrhllkd<-*
+iFt+i +i++y+ +++
Y51A2D.5 546 AIFTIIAFIFIYFLVPET 563
sugar_tr: domain 2 of 2, from 470 to 575: score 88.0, E = 1.3e-24
*->aagivaivfillfiafFalgwGpipwvilsElFPtkvRskalalata
++ i+ iv++ +++ F+ g++ +pwv++sE +P+ Rs++ +++t
Y51A2D.5 470 SYTILPIVMMGVYLLTFSCGFTSLPWVLNSEFYPMWARSTCVSISTL 516
anwlanfiigflfpyitgaiglalggyvflvfagllvlfilfvfffvPET
+nw++n ii++++ ++t ai ++ f+++a++ +++++f++f+vPET
Y51A2D.5 517 SNWVFNLIIALTYLSLTHAIT---KYGAFWLYAIFTIIAFIFIYFLVPET 563
kGrtLEeieelf<-*
G +++e+e lf
Y51A2D.5 564 TGYSIDEVEMLF 575