Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y51A2D.8
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Query: Y51A2D.8 CE19204 Cysteine proteases (2 domains) status:Partially_confirmed TR:Q9XXQ7 protein_id:CAA16407.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_C1 Papain family cysteine protease 198.8 8.1e-59 1
Ribosomal_L10 Ribosomal protein L10 4.2 7.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L10 1/1 34 48 .. 92 106 .] 4.2 7.3
Peptidase_C1 1/1 147 376 .. 1 337 [] 198.8 8.1e-59
Alignments of top-scoring domains:
Ribosomal_L10: domain 1 of 1, from 34 to 48: score 4.2, E = 7.3
*->edpfelakvledfkk<-*
++p +l+k++edfkk
Y51A2D.8 34 DHPEKLYKAFEDFKK 48
Peptidase_C1: domain 1 of 1, from 147 to 376: score 198.8, E = 8.1e-59
*->lPesfDWRe.Wkgga..VtpVKdQGiqCGSCWAFSavgalEgrycik
P+ fD R+++ +g V+p+KdQG qC +CW F+ ++ +E y+ +
Y51A2D.8 147 YPDYFDLRNeKINGRyiVGPIKDQG-QCACCWGFAVTALVETVYAAH 192
tgtkawggklvsLSEQqLvDCdgedygnngesCGyGCnGGGlmdnAfeYi
+ gk sLS Q++ DC + g GC+G G+ + +Y+
Y51A2D.8 193 S------GKFKSLSDQEVCDCGT--EGTP------GCKG-GSLTLGVQYV 227
kkeqIsnNgGlvtEsdYekgCkPYtdfPCgkdggndtyypCpgkaydpnd
kk Gl ++dY PY + + +g
Y51A2D.8 228 KK------YGLSGDEDY-----PYD-QNRANQG----------------- 248
TgtCkynckknskypktyakikgygdvpynvsTydEealqkalak.nGPv
+C+ + + + + a ++ ++ ++ + Ee++ + l + Pv
Y51A2D.8 249 -RRCRLR-ETDRIV---PARAFNFAVINPR---RAEEQIIQVLTEwKVPV 290
sVaidasedskgDFqlYksGendvgyGvYkhtsageCggtpfteLdHAVl
+V + ++++ F Yk G v ++ +C+ +HA +
Y51A2D.8 291 AVYFKVGDQ----FKEYKEG-------VIIED---DCRRA---TQWHAGA 323
iVGYGteneggtfdetssskksesgiqvssgsngssgSSgssgapiedkg
iVGY t +++ ++++
Y51A2D.8 324 IVGYDTVEDS------------------------------------RGRS 337
kdYWIVKNSWGtdWGEnGYfriaRgknksgkneCGIaseasypi<-*
dYWI+KNSWG dW E GY+r++Rg++ +C I++++ +
Y51A2D.8 338 HDYWIIKNSWGGDWAESGYVRVVRGRD-----WCSIEDQPMTGD 376