hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y51A2D.18
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y51A2D.18  CE22325   Sugar (and other) transporter status:Partially_confirmed TR:Q9XXQ4 protein_id:CAA16411.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
sugar_tr Sugar (and other) transporter                   34.6    3.2e-09   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
sugar_tr   1/3     130   222 ..    55   159 ..    28.7  1.5e-07
sugar_tr   2/3     235   277 ..   181   222 ..    14.3   0.0022
sugar_tr   3/3     420   495 ..   406   488 .]    -0.4       39

Alignments of top-scoring domains:
sugar_tr: domain 1 of 3, from 130 to 222: score 28.7, E = 1.5e-07
                   *->lvvsifflGrliGslfaGklgdrfGRkksllialvlfviGallsgaa
                      ++ s+ ++G l Gs+++G ++d fGRk +  +a++ + iG l+ + +
   Y51A2D.18   130    NSISVQMFGVLTGSIVFGQISDSFGRKIGSQVASLGMLIGWLIVVQS 176

                   pgytTiGlwafyllivGRvlvGlgvGgasvlvPmYisEiAPkalRGalgs
                            ++  + + R +vG++ Gg + ++ ++i E+ Pk++R    +
   Y51A2D.18   177 R--------NLLHFTISRTIVGFFTGGSISIINVFIMENIPKKHR----M 214

                   lyqlaiti<-*
                   + ++ait+
   Y51A2D.18   215 WINMAITW    222

sugar_tr: domain 2 of 3, from 235 to 277: score 14.3, E = 0.0022
                   *->nswgWRiplglqlvpalllligl.lflPESPRwLvekgkleeA<-*
                      +++ W+ +  + + + ++ +++ ++f++ESPRwLv +gk++eA
   Y51A2D.18   235    LASDWKSLAYINAFMCIPGILFFqFFIHESPRWLVTRGKISEA    277

sugar_tr: domain 3 of 3, from 420 to 495: score -0.4, E = 39
                   *->vilsElFPtkvRskalalataanwlanfiigflfpyitgaiglalgg
                      ++++ElFPt +R+ + a+       +n +  +l p+i+        +
   Y51A2D.18   420    IVSAELFPTPIRTIGYAFLQL----WNRVGVVLSPFIFYLAD----Y 458

                   yvflvfagllvlfilfvfff...vPETkGrtLEeieelf<-*
                   +  l f ++ +++ + +f f+  +PETkGr L  +e +
   Y51A2D.18   459 WLALPFCFMILFSLIDTFSFeclLPETKGRHL--VEHMP    495

[DB home][top]