Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y51A2D.19b
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Query: Y51A2D.19b CE30365 locus:slo-1 status:Confirmed TR:Q95V26 protein_id:CAD27617.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BK_channel_a Calcium-activated BK potassium channel 1118.7 0 2
ion_trans Ion transport protein 82.4 3.4e-21 1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 10.2 0.01 1
ABC2_membrane ABC-2 type transporter 3.3 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ion_trans 1/1 177 351 .. 1 228 [] 82.4 3.4e-21
ABC2_membrane 1/1 331 352 .. 241 262 .] 3.3 8.4
zf-C3HC4 1/1 643 662 .. 1 24 [. 10.2 0.01
BK_channel_a 1/2 403 664 .. 1 264 [. 471.9 5.2e-138
BK_channel_a 2/2 746 1106 .. 316 687 .. 648.2 4.4e-191
Alignments of top-scoring domains:
ion_trans: domain 1 of 1, from 177 to 351: score 82.4, E = 3.4e-21
*->ileildyvftviFtlEmllkiialgfklhsriprkYlrspwnilDfl
+ + +d+ f+++F++ +++++ia+ k ++l +++ ++Df+
Y51A2D.19b 177 PSQQIDLGFNIFFLVYFFIRFIAASDK------VWFLLEMYSWIDFF 217
vvlpslislilflsgggsvklirlreslflalsevsygilsvlrllRllR
+ ps++ ++l++ g +++lr+lRl+
Y51A2D.19b 218 TIPPSFVAIYLQRNWLG----------------------FRFLRALRLMT 245
vLRllrllrrapglfefelrtlGWklqslgrslkslfnlllllllllfif
+ +l+++ l+t s++ ++++++++l +
Y51A2D.19b 246 ---VPDILQYLNI-----LKTS--------SSIRLTQLVTIFVAVCLTGA 279
aiigvqlfggelnkccnpingntnFdnfgeaflwlFqtlTteGwgdimpd
+++ ++ +g ++k+ + n++ ++ ++++++++t++t+G+gdi+++
Y51A2D.19b 280 GLVHLLENSGDFFKG----FINPHRITYADSVYFVLVTMSTVGYGDIYCT 325
tlagtvlgkiyfvifiilggflllNlfiavi<-*
t g +++ if+il+g+ +++ +++ i
Y51A2D.19b 326 ----TLCGRLFM-IFFILFGLAMFASYVPEI 351
ABC2_membrane: domain 1 of 1, from 331 to 352: score 3.3, E = 8.4
*->lvslillliGlliFrkfekrfa<-*
l+++ + l+Gl++F ++ +++a
Y51A2D.19b 331 LFMIFFILFGLAMFASYVPEIA 352
zf-C3HC4: domain 1 of 1, from 643 to 662: score 10.2, E = 0.01
*->CrICleelkepsndfplilpCgHs<-*
C C++ k+ s li C+++
Y51A2D.19b 643 CKQCHDDIKDVS----LIKKCKCK 662
BK_channel_a: domain 1 of 2, from 403 to 664: score 471.9, E = 5.2e-138
*->EivFLHnisPdLELEALFKRHFtqvEFYqGsvLnPHDLARvKiEsAD
E+vFLH + PdLELE LFKRHFt+vEF+ G v+ DL RvKi AD
Y51A2D.19b 403 EVVFLHRVVPDLELEGLFKRHFTKVEFFTGTVMDSLDLSRVKIGDAD 449
ACLiLAnKYCADPDAEDAsnimRvisiKnYHPKiRiitqmLqYHnKAHLL
ACL+LAnKY PDAEDA+nimRvisiKnY iR+i q++qYHnKA LL
Y51A2D.19b 450 ACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLL 499
niPsWnWKEGDDAiCLAELKLGFiAqsCLAqGLstmLAnLFsmRsFiKiE
niPsW WK GDD iCLAELKLGFiAqsCLA+G stm+AnLF+mRsF K
Y51A2D.19b 500 NIPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF-KTS 548
EDt..WqKYYLEGvsnEmYtEYLssAFvGLsFPavCELvFvKLKLLmiAi
t++W YL G EmYt+ Ls FvG+ FP +L F +L LL++Ai
Y51A2D.19b 549 QTTpdWLNLYLCGAGMEMYTDTLSHSFVGMTFPEAVDLLFNRLGLLLLAI 598
EYK.sekREsRsrkriLinPGnHlKiqEGtLGFFiAsDAKEvKRAyFYCK
E K+ e++E i inPG H+ iq t GFFiA A EvKRA+F+CK
Y51A2D.19b 599 ELKdEENKECN----IAINPGPHIVIQPQTQGFFIAQSADEVKRAFFWCK 644
Achdditdpkrikkcgckrl<-*
chddi d ikkc ck l
Y51A2D.19b 645 QCHDDIKDVSLIKKCKCKNL 664
BK_channel_a: domain 2 of 2, from 746 to 1106: score 648.2, E = 4.4e-191
*->KYDstGmFHWCagKeiEKviLtRsEAAmtvLsGHvvvCiFGDvksAL
KYDstGmFHWC+ +++E +L R AAmtvL GHvvvC+F D s L
Y51A2D.19b 746 KYDSTGMFHWCPSRNLEDCVLERHQAAMTVLNGHVVVCLFADQDSPL 792
iGlRnLvmPLRAsnFHYHELKHivFvGslEYLKREWEtLHnFPKvsiLPG
iGlRn +mPLR snFHYHELKH+v vG lEYL++EW tL n PK+siL G
Y51A2D.19b 793 IGLRNFIMPLRSSNFHYHELKHVVIVGDLEYLRKEWKTLYNLPKISILNG 842
tPLsRADLRAvninlCDmCviLsAnqnniDDasLqDKECiLAsLniKsmq
PLsRADLRAvninlCDmCvi+sA n +D+ L DKE iLAsLniK+mq
Y51A2D.19b 843 SPLSRADLRAVNINLCDMCVIISARVPNTEDTTLADKEAILASLNIKAMQ 892
FDDsiGvLqAnsqGFtPPGmDRssPDnsPvHGlLRqPsittGvniPiitE
FDD +G q DR sP sP+ + + G n+P+itE
Y51A2D.19b 893 FDDTLGFFPMRHQ-----TGDR-SPLGSPIS--MQKKGAKFGTNVPMITE 934
LvnDsnvqFLDqDDDDDPDtELYLtqPFACGtAFAvsvLDsLmsAtYFnD
LvnDsnvqFLDqDDDDDPDtELYLtqPFACGtAFA+svLDsLms tYFnD
Y51A2D.19b 935 LVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAISVLDSLMSTTYFND 984
niLtLiRtLvtGrAtPELEALiAEEnALRrsYstPqtLAnRDRCrvAqLA
LtLiRtLvtG+AtPELE ++AE LR++YstP tL nRDRCr+Aq+
Y51A2D.19b 985 SALTLIRTLVTGGATPELELILAEGAGLRGGYSTPETLSNRDRCRIAQIS 1034
LlDGPFADLGDGGCYGDLFCKALKtYnmLCFGiYRLRDAHLstPsqCtKR
L D P+ + YG +F AL+ Y LC G+YRL D KR
Y51A2D.19b 1035 LQDNPYDGVVHNTTYGAMFTIALRRYGQLCIGLYRLHDQD---NPDSMKR 1081
YvitnPPYEFELvPtDLiFCLmqFD<-*
YvitnPP E + tD ++ L qFD
Y51A2D.19b 1082 YVITNPPAELRIKNTDYVYVLEQFD 1106