Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y51A2D.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y51A2D.4 CE19201 Sugar (and other) transporters status:Partially_confirmed TR:Q9XXR3 protein_id:CAA16400.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 393.0 2.9e-114 2
DUF665 Putative RNA binding domain 4.5 8.5 1
Plant_viral_rep Plant viral-response family 4.4 5.2 1
aa_permeases Amino acid permease 3.1 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF665 1/1 334 348 .. 66 82 .] 4.5 8.5
sugar_tr 1/2 28 370 .. 1 371 [. 304.5 1.3e-87
aa_permeases 1/1 517 539 .. 476 498 .] 3.1 5.1
Plant_viral_rep 1/1 534 561 .. 140 168 .] 4.4 5.2
sugar_tr 2/2 468 567 .. 386 488 .] 93.0 4.9e-26
Alignments of top-scoring domains:
DUF665: domain 1 of 1, from 334 to 348: score 4.5, E = 8.5
*->vPynkakVvkiGdiiiv<-*
vP++ ++k+G +ii
Y51A2D.4 334 VPMS--LIEKVGRRIIF 348
sugar_tr: domain 1 of 2, from 28 to 370: score 304.5, E = 1.3e-87
*->valvaalgGgflfGyDtgviggflalidflfrfglltssgalaslvg
+a ++gG flfGyDt v++++ ++ + ++l+
Y51A2D.4 28 LAAASVIGG-FLFGYDTSVVSAAMLYMP---DAPGLKPM-------- 62
ystvltglvvsifflGrliGslfaGklgdrfGRkksllialvlfviGall
+tv++ vsi ++++Gsl+ G+ +d++GR+k +l a+++f iGal+
Y51A2D.4 63 -DTVWQEVLVSISPGMAAVGSLMSGTSSDYIGRRKVILGASAIFTIGALV 111
sgaapgytTiGlwafyllivGRvlvGlgvGgasvlvPmYisEiAPkalRG
++a+ + +l+vGRvl+G+++G+as++vP+Y++E AP+++RG
Y51A2D.4 112 CAASV--------NKIMLLVGRVLLGIAIGFASMIVPVYLGETAPTHVRG 153
algslyqlaitiGilvAaiiglglnktnndsalnswgWRiplglqlvpal
+l++ + l+i++G++vA+i+g +++++ + ++gWR+++++++vp++
Y51A2D.4 154 MLVAAFALMISFGQVVANITGGAFSYIDPY----NVGWRLMFAFAAVPSI 199
llligllflPESPRwLvekgkleeArevLak.lrgv.edvdqeiqeikae
+++++ +flPE+PRwL+e+g ++e+revL+k +g +e v e++ei+a
Y51A2D.4 200 IQFVCFMFLPETPRWLYENGFETETREVLEKvYNGDkEWVEYEMAEIIAF 249
leatvseekagkaswgelfrgrtrpkvrqrllmgvmlqafqQltGiNaif
e +e+++ as ++r p v+++ ++g+mlqafqQl GiN i
Y51A2D.4 250 NEDQAKENEKAHASGPVIWRILKTPHVLKACFIGSMLQAFQQLAGINTIL 299
YYsptifksvGvsdsvasllvtiivgvvNfvfTfvaLiflvDrfGRRpll
YY i +s G+s+ ++ +++++++++ Nf+ +fv l+++ GRR ++
Y51A2D.4 300 YYTADIIRSSGISNNHTTIWISVLLSLCNFIGPFVP-MSLIEKVGRRIIF 348
llGaagmaicflilgasigvalllln<-*
l+++ + ++++g va+ll+n
Y51A2D.4 349 LFSCGLVVLSLVFIG----VAFLLVN 370
aa_permeases: domain 1 of 1, from 517 to 539: score 3.1, E = 5.1
*->fvaaylaiplfiilwigykfikr<-*
++++yl+++ +i+++++++++
Y51A2D.4 517 IALTYLSLTQVIGKYGAFWLYAG 539
Plant_viral_rep: domain 1 of 1, from 534 to 561: score 4.4, E = 5.2
*->cwhvalGLtililivglYafaagkygsrr<-*
+w++a Lt++ +i+ l+++ k +s+
Y51A2D.4 534 FWLYAG-LTVIAFIFILFLVPETKGYSIE 561
sugar_tr: domain 2 of 2, from 468 to 567: score 93.0, E = 4.9e-26
*->ivfillfiafFalgwGpipwvilsElFPtkvRskalalataanwlan
i ++ +++ F+ g++ +pwv++sE +P+ Rs++ a++t +nw++n
Y51A2D.4 468 IIACGVYLLTFSSGFTSLPWVLNSEFYPMWARSTCVAISTTSNWVFN 514
fiigflfpyitgaiglalggyvflvfagllvlfilfvfffvPETkGrtLE
ii++++ ++t+ ig ++ f+++agl v++++f++f+vPETkG ++E
Y51A2D.4 515 LIIALTYLSLTQVIG---KYGAFWLYAGLTVIAFIFILFLVPETKGYSIE 561
eieelf<-*
e+e lf
Y51A2D.4 562 EVEMLF 567