hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y51H1A.5
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Query:  Y51H1A.5  CE24411   Histone deacetylase family status:Partially_confirmed TR:Q9U266 protein_id:CAA21669.2

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Hist_deacetyl Histone deacetylase family                327.1      2e-94   1
Glu-tRNAGln   Glu-tRNAGln amidotransferase C subunit      6.8        1.3   1
DUF388        Domain unknown function (DUF388)            5.1        4.1   1
RRF           Ribosome recycling factor                   3.8        9.1   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Hist_deacetyl   1/1       5   320 ..     1   350 []   327.1    2e-94
RRF             1/1     318   339 ..     1    22 [.     3.8      9.1
Glu-tRNAGln     1/1     398   416 ..     1    19 [.     6.8      1.3
DUF388          1/1     474   496 ..   109   131 ..     5.1      4.1

Alignments of top-scoring domains:
Hist_deacetyl: domain 1 of 1, from 5 to 320: score 327.1, E = 2e-94
                   *->rtvgyvydpevlnheckisygatHpenpeRlrlihelLleygllkkm
                      ++v +++d + ++h  +    ++H e p+Rl +i+e+L   +ll +
    Y51H1A.5     5    KKVFVIFDHQEQRHDQP--WPSYHIEVPRRLDAILERLNTTKLLTDP 49

                   eivtnsqeprkatdeelllvHsedyvefleslsktnleelekgtdkille
                   +i    +++r+a + e+l vH++ yv++ +s + ++ e++e+
    Y51H1A.5    50 RIEH--IPRREAEESEILAVHTKRYVDDVKSTETMTVEQQES-------- 89

                   ielkyfnkgdDtpvfaglyeaarlavGgsleladrllegeldnafnwagG
                        + k++D++v++ ++ +a+la+G+s++l + +++ +   +++ +++
    Y51H1A.5    90 ----FCTKYEDIYVNSATWHRAKLAAGASIDLMTSVMAAK-RPGIAFIRP 134

                   PgHHAkkgeasGFCyfNNvAiAikyllkkyPlyvkRVliiDfDvHHGDGT
                   PgHHA ++e++GFC+fNNvAiA+k +++    + ++Vli+D DvH G+GT
    Y51H1A.5   135 PGHHAMPDEGCGFCIFNNVAIAAKAAIQ----NGQKVLIVDYDVHAGNGT 180

                   QeiFyddd..rVltvSfHkygkGefFPGtieGditeiGkgkGkgytlNiP
                   Qe +++  +++V+ +S+H+y++G f+P        ++G   ++++t+N+P
    Y51H1A.5   181 QECVEQMGegNVQLISIHRYENGHFWPNM-----PQTGIYHNYKNTINLP 225

                   LnedgtdDesYlsafkhviepvleqFkPdaivisaGfDalygDptqLgsf
                   Ln  g +D++Y+++f+h+i+p +  F+Pd++++s GfDa  gDp   gs+
    Y51H1A.5   226 LNTIGLTDADYHALFTHIILPTIHAFQPDLLLVSSGFDASIGDP--EGSM 273

                   nLtiegygemvrflkslaqkhcdgpllvvlEGGYtlraianvarcwialt
                   ++t+ g+++m+r+l  ++     +p+ ++lEGGY l+   ++a     ++
    Y51H1A.5   274 QVTPAGFATMIRMLIDTG-----IPVAALLEGGYFLD---ALAADSEWVL 315

                   ggllg<-*
                   ++llg
    Y51H1A.5   316 RALLG    320

RRF: domain 1 of 1, from 318 to 339: score 3.8, E = 9.1
                   *->alkeelstiRTGRanpslldki<-*
                      +l ee+ +iR+ ++++++ d+i
    Y51H1A.5   318    LLGEEIPRIRVEKIHSAIADTI    339

Glu-tRNAGln: domain 1 of 1, from 398 to 416: score 6.8, E = 1.3
                   *->LteeevekFvtqLstIiaf<-*
                      +te  v +F+ qL++I+a+
    Y51H1A.5   398    FTEQKVAEFKDQLESILAS    416

DUF388: domain 1 of 1, from 474 to 496: score 5.1, E = 4.1
                   *->qPkdkVkItGevDNKdlnkaeiD<-*
                      +Pk ++k++G+v+ +d+ k e+D
    Y51H1A.5   474    DPKHTIKLYGKVKPEDFGKIELD    496

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