Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y51H4A.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y51H4A.7 CE22333 status:Partially_confirmed TR:Q9NAE2 protein_id:CAB61139.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Urocanase Urocanase 350.9 1.4e-101 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Urocanase 1/1 148 714 .. 14 560 .] 350.9 1.4e-101
Alignments of top-scoring domains:
Urocanase: domain 1 of 1, from 148 to 714: score 350.9, E = 1.4e-101
*->AprGseLecksWliEAalRmlrnnLDPevAEkPedLvvYGGiGkAAR
Ap se+ + A + m+ nnLD vA P++Lv YGG G+
Y51H4A.7 148 APPVSEIGAHCEQASAIILMILNNLDKRVAQFPQELVTYGGNGQVFS 194
nWecfekivesLkaLkddEtLLvqsGKPvGvFrtHadAPRvLiAnsnLvP
nW f +++ L ++ d tL+ sG P G+F +d PR+ + n ++P
Y51H4A.7 195 NWIQFRLVLRYLYTMTDHQTLVLYSGHPLGLFPSTPDSPRMTVTNGMMIP 244
kWAdWeHFhELdkkGLmmYGqmtAGsWiYiGsqGivqGtyEtFvEagRqH
+ + e ++ + G+ YGqmtAGs+ YiG qGiv Gt t agR+
Y51H4A.7 245 SYSTKELYDKYFALGVTQYGQMTAGSFCYIGPQGIVHGTTITVLNAGRRM 294
ygGslkgklvLtAGLGGmGGAqPLaatlagavvlavEvqesRiDfRletr
sl gk +tAGLGGm GAqP aa +ag + + E+ + + +R +
Y51H4A.7 295 GLDSLAGKVFVTAGLGGMSGAQPKAAKIAGCIGVIAEISDTALLKRHQQG 344
YvDrkaasvdeALaiiekakkegkaisiaLlGnAAEilpeLvkRakagGv
++D + +++e + +i+++ ++ aisi+ lGn ++ + L +
Y51H4A.7 345 WLDVYSKDLEEIVNWIKEYREKKEAISIGYLGNVVDLWERLAEE---PEC 391
kpDivtDqtsAHDP.lnGYlPaGysleeaeslrqdePeavvkaAkqsmav
+++ Dqts H P l G+ PaG ++e+ ++ ++P + k+ + s+ +
Y51H4A.7 392 LVELGSDQTSLHNPfLGGFYPAGLTFEQSNQMMTSDPVKFKKLVQNSLIR 441
HvqAmLdFqkkGvptfDYGnniRqvAkdEGv.........enAFDFPGFv
+ A+ kG+ DYGn + G + +++ +++ F +P ++
Y51H4A.7 442 QIAAIDKIAAKGMYFWDYGNAFLLECQRAGAnllredaqdDKSFRYPSYM 491
PAYiRPLFCeGkGPFRWaALsGdpeDiYktDAklKeLfPedkaL......
+ +F G GPFRW+ sG peD+ tD +++ e k+ + ++
Y51H4A.7 492 QDIMGDIFSMGFGPFRWVCTSGKPEDLRLTDQTACKIIDELKDTdvpeyv 541
.......HRWlDmAqEriaFqGLPaRiCWlGlGeRkklGLAfnElvRsGE
+++ ++ +W++ A G aRi + R l AfnElv+sG
Y51H4A.7 542 kqqyldnKKWIEEAEKNKLVVGSQARILYSDRAGRVALASAFNELVKSGK 591
LkAPvviGRDHLDcGsvasPnREtEAmkDGsDAvsDWplLnALlntAgGA
++A +vi RDH D sP REt + DGs +D ++ n + GA
Y51H4A.7 592 VSAAIVISRDHHDVSGTDSPFRETSNVYDGSAFTADMAVQNCIGDSFRGA 641
tWvslHHGGGvGmGfsqHaGmvivaDGteeAdeRlaRvLtnDPgtGvmRH
tWv+lH GGGvG G G iv DG+ A+ R +L D Gv R
Y51H4A.7 642 TWVALHNGGGVGWGDVINGGFGIVLDGSSDAARRAEGMLNWDVPNGVTRR 691
ADAGYevAvdvAkeqdlilPmak<-*
G A + ++ + ++ +
Y51H4A.7 692 SWSGNAKAQEAIQRAEKQVDGLR 714