Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y51H7C.9
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Query: Y51H7C.9 CE26153 status:Partially_confirmed TR:Q95XY8 protein_id:AAK39340.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PALP Pyridoxal-phosphate dependent enzyme 228.1 2.4e-66 1
ACT ACT domain 20.7 0.00022 1
Thr_dehydrat_C C-terminal regulatory domain of Threon 3.9 8.1 1
DUF533 Protein of unknown function (DUF533) 3.4 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF533 1/1 204 223 .. 1 23 [. 3.4 6.6
PALP 1/1 51 342 .. 1 375 [] 228.1 2.4e-66
Thr_dehydrat_C 1/1 354 385 .. 1 32 [. 3.9 8.1
ACT 1/1 364 437 .. 1 75 [] 20.7 0.00022
Alignments of top-scoring domains:
DUF533: domain 1 of 1, from 204 to 223: score 3.4, E = 6.6
*->kgdqqlkslLnplGgGALaAgll<-*
q ++ L+p+GgG+L+Ag++
Y51H7C.9 204 ---QMPDAILVPVGGGGLVAGVA 223
PALP: domain 1 of 1, from 51 to 342: score 228.1, E = 2.4e-66
*->vtelignTPLvrlnrlskelgeglganaaveiylKlEdlnGPtGSfK
+ i +T +++ ls + ++ +iylK E + tGSfK
Y51H7C.9 51 IQNGIVRTDCRKSRCLS----KLFDM----NIYLKMEVNQ-DTGSFK 88
DRglalnmillAeklgkkggivpgtvqveskttiiEptsGNtGialAlaa
Rg a +++ + ++ kk+g+ ++ ++GN++ al+l++
Y51H7C.9 89 ERG-ARYALQNLPEEKKKAGVYAA-------------SAGNHALALSLHG 124
allGlkciivMPatdtsreKraqlralGAeaivvpvagGgsddladaiak
+ lG+++ +vMP+ +++ K+++ lGA +++ g d a+ +
Y51H7C.9 125 KQLGVEVNVVMPKI-APLMKINRCQDLGA----NILVQ-GEDI-AESREI 167
AeelaeenpentayllnqaaGpfdnPanpeiagqktigpEIweQlggkei
A+++a n +++n +d+ ++++ g +t+g EI+eQ++ +
Y51H7C.9 168 ALRMAH--DSN-GTYING----YDHYDILA--GAGTTGIEILEQIQ-M-- 205
sigrlpDavvapvGgGGtitGiarylKelnpngkidvlelpvkvigVEPe
pDa+ +pvGgGG+++G+a ++K l+p ++vigV e
Y51H7C.9 206 -----PDAILVPVGGGGLVAGVATAVKALSPT---------TEVIGVVSE 241
gsavlsgslkatltlagkpGplhgrdskyllqDepvtlpetksigiGlgv
+ + +sl+ +G+ pv +p+ + ++Gl+v
Y51H7C.9 242 TCQAIVKSLQ--------AGH-------------PVYTPTRPTLADGLAV 270
prvgefvppildellvrdevvtVtdeealeaarlLareEGifvgpssgaa
p +g +++ + ++ d+v++V+++++ a+++L+++E+++++++++
Y51H7C.9 271 PNAGVNAFASMIGKV--DRVISVPENDIAVAILRLIENEKVVCEGAGAIG 318
vaaalklakegkkpegkgkriVvilsgg<-*
+ a l+ + + kgk++V ilsgg
Y51H7C.9 319 IGAILSGKLNHL----KGKTVVSILSGG 342
Thr_dehydrat_C: domain 1 of 1, from 354 to 385: score 3.9, E = 8.1
*->EraelgeglEalfavefPErpGaLkkFlsllg<-*
Er++++ + + ++v++P++pG L k +l+g
Y51H7C.9 354 ERGLAYDHRVIRLSVIIPDKPGGLSKLTGLVG 385
ACT: domain 1 of 1, from 364 to 437: score 20.7, E = 0.00022
*->tvlevevpDrPGlLarvfsaLaergiNIesisqgtsed.e.eddg.a
++l+v+ pD+PG L++++++ +e+ N+++++ + + ++d +
Y51H7C.9 364 IRLSVIIPDKPGGLSKLTGLVGELSGNVRDLYLER--AfMrNDMSsQ 408
iisfvvddeedleealeaLkklvdvvkvvdv<-*
++ +v++ + ee +Lk++++ v++ +
Y51H7C.9 409 RVKMVIE--VRGEEHEMQLKQKFQEVYDPSN 437