Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y52B11A.10
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Query: Y52B11A.10 CE20298 status:Partially_confirmed TR:Q9U255 protein_id:CAB63391.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MIF4G MIF4G domain 133.4 5.9e-38 1
MA3 MA3 domain 111.8 2e-32 1
Pencillinase_R Penicillinase repressor 5.2 3.4 1
ldh_C lactate/malate dehydrogenase, alpha/be 5.2 3.7 1
pinin_SDK_N pinin/SDK conserved region 4.9 4.6 1
Nucleoporin2 Nucleoporin autopeptidase 3.6 4.5 1
Flu_NS1 Influenza non-structural protein (NS1) 2.3 7.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ldh_C 1/1 17 34 .. 164 181 .] 5.2 3.7
pinin_SDK_N 1/1 91 123 .. 105 137 .] 4.9 4.6
Pencillinase_R 1/1 266 278 .. 1 13 [. 5.2 3.4
Flu_NS1 1/1 402 430 .. 1 29 [. 2.3 7.5
Nucleoporin2 1/1 419 433 .. 174 188 .] 3.6 4.5
MIF4G 1/1 332 529 .. 1 230 [] 133.4 5.9e-38
MA3 1/1 628 734 .. 1 117 [] 111.8 2e-32
Alignments of top-scoring domains:
ldh_C: domain 1 of 1, from 17 to 34: score 5.2, E = 3.7
*->ekSadtLkkiiekgfafv<-*
+kSa++Lkk ++k+f++
Y52B11A.10 17 RKSAKQLKKMQAKAFSQR 34
pinin_SDK_N: domain 1 of 1, from 91 to 123: score 4.9, E = 4.6
*->DaEDeDdKKPALqssvvAtsKERtRRDLiqDqn<-*
D+EDe++KKP +v s + +R D
Y52B11A.10 91 DSEDEEEKKPTNRKGIVEVSVNKGKRKYGDDSE 123
Pencillinase_R: domain 1 of 1, from 266 to 278: score 5.2, E = 3.4
*->anKiveISdAEwe<-*
+ KiveISd E e
Y52B11A.10 266 DEKIVEISDSEIE 278
Flu_NS1: domain 1 of 1, from 402 to 430: score 2.3, E = 7.5
*->mDsntvssFqvDCfLWHvRKrladqelgD<-*
m sn +s+ v+Cf+ + K + + e D
Y52B11A.10 402 MISNEISAHFVECFMCDLVKSMQEEEEMD 430
Nucleoporin2: domain 1 of 1, from 419 to 433: score 3.6, E = 4.5
*->LldeeeeEededsks<-*
L+ + eEe++d+ks
Y52B11A.10 419 LVKSMQEEEEMDDKS 433
MIF4G: domain 1 of 1, from 332 to 529: score 133.4, E = 5.9e-38
*->ekkvkgllnkLsespenfekiikellkllmsdlrenDPennkellke
e+ v++++nkLs ++++ k+ +++ +l+ ++ +k+ k+
Y52B11A.10 332 ERAVNSIINKLS--DAMLIKSQQGIAELWANS--------SKNDVKS 368
lielifekaveep.....nfipayArLcalLnsknpkteFgklllnrlqe
+ ++ ka + p + +++++++y++L+a+++++++ +e+++++++++++
Y52B11A.10 369 ALYKFLSKALLAPfrlqdSLLTTYGALIAMCHTMIS-NEISAHFVECFMC 417
eFekreleaeleeeeesdrrrrlglvrFlgELynfqvltekiileclkel
++ k +++eeee+d +++ ++v+F ++L+ f++l+ +i++e++++l
Y52B11A.10 418 DLVK-----SMQEEEEMDDKSMENCVIFTAFLVVFRILQPSILIEIIDKL 462
ledlteedlqdqvrdeeslecllslLetiGkdLensekspklmdellerl
e+l+ +l ++ +l+ ++ k L s++l+++ ++++
Y52B11A.10 463 AENLNL----------TNLFAIRTLIAYAYKSLK--KTSWPLVTQKIDEI 500
qdillkrdkkhvrvesepelssrirfmledlielrknk<-*
+++++k++ + +r +f+le +i l+k++
Y52B11A.10 501 HSEFEKKP---------ISALPRAKFLLEEVILLKKSP 529
MA3: domain 1 of 1, from 628 to 734: score 111.8, E = 2e-32
*->lkkkielileEYlssGDtdEAvrclleLglpeefhhevvkklivlal
++++i++ + ++ D d+A+++ll+L+l++e ++e+v++li +++
Y52B11A.10 628 VRRHIFCSVASAD---DEDDAFERLLKLQLKGEKERELVHVLIAMMM 671
eratvkktyremyskLLsrlcqegvistkqfekgFsrvlesleDlelDiP
+ kty+ +y+ LL+r+c++++ +++++++++l +++ l
Y52B11A.10 672 KE----KTYNAFYATLLQRFCEFNKRFVITLQFALWDRLRECDQLKPF-- 715
davrnLaeFvarlisdgiLp<-*
+++ La+++++lis+++++
Y52B11A.10 716 -QRGSLAQLLQHLISNEVMS 734