Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y53C10A.12
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Query: Y53C10A.12 CE22380 HSF-type DNA-binding domain status:Partially_confirmed TR:Q9XW45 protein_id:CAA22146.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HSF_DNA-bind HSF-type DNA-binding 203.9 5.5e-59 1
hormone Somatotropin hormone family 7.5 0.019 1
bZIP bZIP transcription factor 4.9 7 1
DPRP Deoxyribodipyrimidine photolyase-related 3.7 2.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DPRP 1/1 218 237 .. 508 528 .] 3.7 2.1
bZIP 1/1 218 243 .. 40 65 .] 4.9 7
hormone 1/1 222 263 .. 147 190 .. 7.5 0.019
HSF_DNA-bind 1/1 90 289 .. 1 207 [] 203.9 5.5e-59
Alignments of top-scoring domains:
DPRP: domain 1 of 1, from 218 to 237: score 3.7, E = 2.1
*->aGeleAireeAealregveal<-*
a e++A+re+A+++ ++ l
Y53C10A.12 218 A-EMRAMREKAKNMEDKMNKL 237
bZIP: domain 1 of 1, from 218 to 243: score 4.9, E = 7
*->aeNkaLrkelerLkkevakLksenee<-*
ae++a+r+++++ +++ kL++en++
Y53C10A.12 218 AEMRAMREKAKNMEDKMNKLTKENRD 243
hormone: domain 1 of 1, from 222 to 263: score 7.5, E = 0.019
*->tIlsKAkeleekiksLlegierifskvidpsertineaypaWsg<-*
+++ KAk++e+k ++L ++++ ++++ s+r+++ + +++++
Y53C10A.12 222 AMREKAKNMEDKMNKLTKENRDMWTQMG--SMRQQHARQQQYFK 263
HSF_DNA-bind: domain 1 of 1, from 90 to 289: score 203.9, E = 5.5e-59
*->PaNEFLsKLwrlVeDpstddlIcWStnGnSFvVlDeerFAkelLPkY
P FL KLw++VeDp ++++W ++G SF++ D+ F + +LP +
Y53C10A.12 90 PV--FLIKLWNIVEDPNLQSIVHWDDSGASFHISDPYLFGRNVLPHF 134
FKHNNFASFVRQLNmYGFrKVvhiesGrkvdpdrde.lwEFqhPnFkrGq
FKHNN+ S VRQLNmYGFrK + + +G++ + + d++ +EF+hP F +G+
Y53C10A.12 135 FKHNNMNSMVRQLNMYGFRKMTPLSQGGLTRTESDQdHLEFSHPCFVQGR 184
ehLLenIkRKksasrs.kpeeqknqqedlhkilselqvmrgsQsnlesrl
++LL +IkRK sa + + ++++q +l ++ e mr++ n+e +
Y53C10A.12 185 PELLSQIKRKQSARTVeDKQVNEQTQQNLEVVMAEMRAMREKAKNMEDKM 234
salkeENeaLWrEvavLRqkhvKLRqQQqvidKllqflvslvqpnklksi
l++EN W ++ Rq h+ +QQq Kll flvs++qp+ s+
Y53C10A.12 235 NKLTKENRDMWTQMGSMRQQHA---RQQQYFKKLLHFLVSVMQPGL--SK 279
sgvkrksliHEL<-*
+ kr +l E+
Y53C10A.12 280 RVAKRGVL--EI 289