Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y53C12A.1
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Query: Y53C12A.1 CE14884 locus:wee-1.3 serine\/threonine kinase status:Partially_confirmed TR:O18209 protein_id:CAB16484.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 192.7 5.9e-54 1
DNA_pol_viral_C DNA polymerase (viral) C-terminal dom 0.5 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DNA_pol_viral_C 1/1 195 207 .. 1 13 [. 0.5 9.6
pkinase 1/1 108 355 .. 1 294 [] 192.7 5.9e-54
Alignments of top-scoring domains:
DNA_pol_viral_C: domain 1 of 1, from 195 to 207: score 0.5, E = 9.6
*->gskgvlpqekrvk<-*
++k+ lp++++++
Y53C12A.1 195 TEKHALPEDEIWN 207
pkinase: domain 1 of 1, from 108 to 355: score 192.7, E = 5.9e-54
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkk..ekesikekrf
+++ e++G+GsfG+V+ a+ + ++ +++AvK+ + + +si++
Y53C12A.1 108 FQIDEIIGRGSFGEVFAARCR-EDSQLYAVKVSLApiRQHSISK--- 150
lrEiqilkrLs.HpNIvrligvfedtddhlylvmEymegGdLfdylrrng
rE++ + + +H+N+v+++ ++e + ++ly+ +E+++ +L++y +++
Y53C12A.1 151 YREAESHMIIPpHKNLVKFYRAWE-ETGRLYIQTELCDQ-SLLKYCTEKH 198
gplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKiaD
+l+e+e+ +i+ ++l+++ +LHsn +H D+KpeNI+l+++ + +K++D
Y53C12A.1 199 -ALPEDEIWNIFVDLLQAVHHLHSNDMIHDDIKPENIFLTKD-MICKLGD 246
FGLArlle.sssklttfvGTpwYmmAPEvilegrgysskvDvWSlGviLy
FGL l++++ ++ G + Y APEv l+gr+ ++ +D+ SlG+++
Y53C12A.1 247 FGLVINLKnPNDVKSAEEGDSKYL-APEV-LNGRP-TKSSDIFSLGMTIL 293
ElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridpleel
E t +l + ++ + +
Y53C12A.1 294 EATT---------------------------DLDVP--------SNGDSW 308
friikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeilnhpw
++i ++ + +++ +S +l++L+ +L+ DP Rp t +++l hp
Y53C12A.1 309 HQIRNG-QIPDRFFAGISTDLRSLIALMLDSDPRIRP---TSRDLLDHPV 354
f<-*
+
Y53C12A.1 355 I 355