Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y53F4B.30
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Query: Y53F4B.30 CE22417 glutathione-S-transferase status:Confirmed TR:Q9NAB3 protein_id:CAB61104.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 59.6 7e-16 1
GST_C Glutathione S-transferase, C-terminal domain 44.8 2.2e-11 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 3 75 .. 1 88 [] 59.6 7e-16
GST_C 1/1 81 195 .. 1 121 [] 44.8 2.2e-11
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 3 to 75: score 59.6, E = 7e-16
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
s++l++fn rg + e++ril ++v++e+ r +++g
Y53F4B.30 3 SYKLTYFNVRG--YGEPARILFH-LADVPFEDFRMTIGDG------- 39
peflklnPlmLpfgqvPaLvdgdGdgkkltESrAIarYlar<-*
+++l+ + pfgq P+L ++ g+ + +S AI rYla+
Y53F4B.30 40 -TWENLKAKT-PFGQAPVLSVD---GFEIPQSAAINRYLAK 75
GST_C: domain 1 of 1, from 81 to 195: score 44.8, E = 2.2e-11
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkpergaekdee
Gk+p+e+ a+ a +d++ d + ++ +a+ ++ e e ++
Y53F4B.30 81 GKTPEEQ-AWTDAIVDQYKDFMVSIKEVGKASAAGKSAE---EVGKI 123
eveealekllkvlealeeeLkghgkkylvGdkltlADialapaldwlerl
+ ++ + ++ ++++ L+++++ +lvGd lt+ADi+ ++ + l
Y53F4B.30 124 IQSDLVPARDAFFVIINKILEKSKSGFLVGDGLTIADIVIVECITTLDKH 173
dpdplfreeyPnLkawrkrvaarp<-*
++ +e P+L+a+r++v a p
Y53F4B.30 174 QLFTA--SEQPKLVALREKVYAIP 195