Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y53F4B.29
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Query: Y53F4B.29 CE22416 glutathione-S-transferase status:Predicted TR:Q9NAB4 protein_id:CAB61103.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 59.8 6.1e-16 1
GST_C Glutathione S-transferase, C-terminal domain 45.0 1.9e-11 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 3 75 .. 1 88 [] 59.8 6.1e-16
GST_C 1/1 81 195 .. 1 121 [] 45.0 1.9e-11
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 3 to 75: score 59.8, E = 6.1e-16
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
s++l++fn rg + e++ril ++v++e+ r ++g
Y53F4B.29 3 SYKLTYFNARG--YGEAARILFH-LADVPFEDFRMTHGDGTW----- 41
peflklnPlmLpfgqvPaLvdgdGdgkkltESrAIarYlar<-*
++++++ Pl gqvP+L ++ g+ + +S AI+rYla+
Y53F4B.29 42 EKLKEKTPL----GQVPVLSVD---GFEIPQSAAIIRYLAN 75
GST_C: domain 1 of 1, from 81 to 195: score 45.0, E = 1.9e-11
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkpergaekdee
Gk+p+e+ a+ a +d++ d + r + gkp++ e +
Y53F4B.29 81 GKTPEEQ-AWADAIVDQFKD-FMGSFREVGKAHAAGKPAE--EIAKI 123
eveealekllkvlealeeeLkghgkkylvGdkltlADialapaldwlerl
++ + ++ + ++ ++++ L+++++ +lvGd lt+ADi++++ + l
Y53F4B.29 124 MQSDVVPARDAFFVIINGILEKSKSGFLVGDGLTFADIVVVECITTLDKN 173
dpdplfreeyPnLkawrkrvaarp<-*
++ + ++ P+L+a+r++v a p
Y53F4B.29 174 QLFTP--AGEPKLVALREKVYAIP 195