Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y53F4B.31
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Query: Y53F4B.31 CE22418 glutathione-S-transferase status:Predicted TR:Q9NAB2 protein_id:CAB61105.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 61.4 2.1e-16 1
GST_C Glutathione S-transferase, C-terminal domain 49.1 1.4e-12 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 3 75 .. 1 88 [] 61.4 2.1e-16
GST_C 1/1 81 195 .. 1 121 [] 49.1 1.4e-12
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 3 to 75: score 61.4, E = 2.1e-16
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
+++l++fn rg +ae++ril ++v++e+ r ++g
Y53F4B.31 3 TYKLTYFNARG--YAEAARILFH-LADVPFEDFRMTHGDGTW----- 41
peflklnPlmLpfgqvPaLvdgdGdgkkltESrAIarYlar<-*
++++ P+ gqvP+L ++ g+++ +S AI+rYla+
Y53F4B.31 42 EKLKDGAPF----GQVPYLTVD---GFDIPQSAAIIRYLAN 75
GST_C: domain 1 of 1, from 81 to 195: score 49.1, E = 1.4e-12
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkperg...aek
Gk+p +e d i+d +f d ++ + + ++ +++g+++ e
Y53F4B.31 81 GKTP-----EEQVWADAIVD-QFKDFMGSFR-ERIMAHFAGksqEEI 120
deeeveealekllkvlealeeeLkghgkkylvGdkltlADialapaldwl
+ e + ++ + ++++l++ L+++++ +lvGd++t+ADi+ + + l
Y53F4B.31 121 AKITSEVVIPARDSYFKILNGLLEKSKSGFLVGDSITFADIVISENITTL 170
erldpdplfreeyPnLkawrkrvaarp<-*
e ++ + +e PnL+a+r++v a p
Y53F4B.31 171 EKNQLFVA--SEQPNLAALREKVYAIP 195