Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y54F10BM.2
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Query: Y54F10BM.2 CE27011 status:Partially_confirmed TR:Q95XK7 protein_id:AAK68893.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GTP_EFTU_D2 Elongation factor Tu domain 2 31.4 2.5e-07 2
GTP_EFTU Elongation factor Tu GTP binding domain 10.2 0.081 4
AIRS_C AIR synthase related protein, C-terminal 8.8 0.13 1
SHQ1 SHQ1 protein 6.3 0.26 1
SSXT SSXT protein (N-terminal region) 4.6 5.3 1
TrkA-C TrkA-C domain 4.1 9.7 1
arf ADP-ribosylation factor family 3.0 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GTP_EFTU 1/4 4 462 .. 206 224 .. -27.1 5.9e+04
GTP_EFTU 2/4 482 498 .. 1 17 [. 12.2 0.023
SSXT 1/1 658 673 .. 1 18 [. 4.6 5.3
GTP_EFTU 3/4 703 720 .. 107 124 .. 8.2 0.29
arf 1/1 793 819 .. 165 191 .] 3.0 9.7
GTP_EFTU 4/4 723 819 .. 164 298 .] 9.4 0.14
SHQ1 1/1 809 829 .. 1 24 [. 6.3 0.26
AIRS_C 1/1 857 869 .. 1 20 [. 8.8 0.13
TrkA-C 1/1 857 883 .. 66 91 .] 4.1 9.7
GTP_EFTU_D2 1/2 832 922 .. 1 96 [] 33.7 5.7e-08
GTP_EFTU_D2 2/2 1062 1110 .. 23 75 .. 2.1 45
Alignments of top-scoring domains:
GTP_EFTU: domain 1 of 4, from 4 to 462: score -27.1, E = 5.9e+04
*->g.e.df.gvidli..................................
++++ ++ ++d++++ +++ + ++ + + +++++++ +++ +
Y54F10BM.2 4 KkGgKKnKDDDWDddaaekklaalsvasnadaqwddeepkkaktkak 50
..................................................
+ +++ ++++++++ +++++++++ ++ + +++++++++++++
Y54F10BM.2 51 apakkgfaalldesepeenyseppepepevkkaakvpekpekekkekkka 100
..................................................
++++++++ +++++ + + +++++++ + ++ ++ + ++++
Y54F10BM.2 101 gkkgkkgeadeeedldallasfqekdgpkvaevapeavaapeaapvddkk 150
..................................................
++++++++ ++++++ +++++++++++++++++++++++++++++++++
Y54F10BM.2 151 skkkkekpvekpeepaveedsdgegdekdqdkkdkkkqkkkdkkkekekk 200
..................................................
++++++++ + ++++ + ++ ++++++++++++ ++++++++ +++++
Y54F10BM.2 201 ekedkkggagakkgnlslikemlkkqqeereeqerlqkeqqerdaqeeke 250
..................................................
+ ++++ ++++++ ++ ++ + ++++ ++ ++ +++++ ++ +
Y54F10BM.2 251 rlerehaekerkeaakeakrleverqkaagtyqtaaqkrqqalaleklra 300
..................................................
+++ + ++++++++ + +++ +++++ +++++++++ ++ ++ +
Y54F10BM.2 301 aghsvpaprdstedeaagvkksfvyvdektkakqeekkrrrleklgqlpv 350
..................................................
+ + + + + + + + +++++++++++++++ ++ + +++++ + ++
Y54F10BM.2 351 aaeasadasasasaeasaetpsttpeqektpepvddwemahsedeasaqk 400
..................................................
++++++ ++ ++ +++++++++++++++++++++++++++++++++++++
Y54F10BM.2 401 ekpkkpatkasdadedddeessdeesdeesedseeseesssdddedrggq 450
lae.vae.dd.l<-*
+ e+v+e+++++
Y54F10BM.2 451 QKEtVEErMErI 462
GTP_EFTU: domain 2 of 4, from 482 to 498: score 12.2, E = 0.023
*->krhrNigiiGHVDHGKT<-*
r + i+++GHVD GKT
Y54F10BM.2 482 LRSPVICVLGHVDTGKT 498
SSXT: domain 1 of 1, from 658 to 673: score 4.6, E = 5.3
*->RGkanmqGGGGGGvPqev<-*
R+++ q G GG+ q++
Y54F10BM.2 658 RTNV--QQGEAGGITQQI 673
GTP_EFTU: domain 3 of 4, from 703 to 720: score 8.2, E = 0.29
*->iniIDTPGHvDFtkevir<-*
+ iIDTPGH+ F++ ++r
Y54F10BM.2 703 FLIIDTPGHESFSNLRTR 720
arf: domain 1 of 1, from 793 to 819: score 3.0, E = 9.7
*->eiqgcsAvkGeGLyEGldWLsnnikkr<-*
+ +++sA G+G+++ + ++n+ + +
Y54F10BM.2 793 CMVPTSAFLGDGIGNLMAFIINQTQTK 819
GTP_EFTU: domain 4 of 4, from 723 to 819: score 9.4, E = 0.14
*->piilvVaiNKiDrvgaelklppvpeelyeelekevrellkpIgedfg
p++++ +NKiDr+ e + + +++ye+l+ ++++
Y54F10BM.2 723 PFVIA--LNKIDRLY-EYES-NPRKDVYELLKSQKPRVQAE------ 759
vidlilaevaeddlmeyyfegeeipiipiSalggdnidelsiknkLkkd.
++ + +i+++ a + +n+ ls++ k
Y54F10BM.2 760 ----------------FKERFNQIVVE--FAEQELNVT-LSNH----KNa 786
dlslvPwykgvSalknkgrkrgaiptLLealddylPsPe<-*
+ s++ +++Sa+ + g i L+ ++++ ++ +
Y54F10BM.2 787 EDSDYVCMVPTSAFLGD----G-IGNLMAFIINQTQT-K 819
SHQ1: domain 1 of 1, from 809 to 829: score 6.3, E = 0.26
*->kayleWYkdqeksnqaqllefsdE<-*
+a++ q++ + aq+l fs+E
Y54F10BM.2 809 MAFII---NQTQTKYAQKLAFSEE 829
AIRS_C: domain 1 of 1, from 857 to 869: score 8.8, E = 0.13
*->kpGDvlillgstgkktgrsG<-*
++GDv++l+gs +G
Y54F10BM.2 857 RAGDVIVLTGS-------DG 869
TrkA-C: domain 1 of 1, from 857 to 883: score 4.1, E = 9.7
*->eaGDvLlvvGkpedl.erlekllggkv<-*
+aGDv+++ G+ +++ ++ +ll +k+
Y54F10BM.2 857 RAGDVIVLTGSDGAItTQVRELLMPKP 883
GTP_EFTU_D2: domain 1 of 2, from 832 to 922: score 33.7, E = 5.7e-08
*->adVfkikytmDpyrrTSdGrGtVatgRvesGtlkkGdeveiggngt.
a+V ++k+ p++ Gt + +++ +Gt++ Gd +++ g++
Y54F10BM.2 832 ATVMEVKA--IPGL------GTTIDVILVNGTMRAGDVIVL--TGSd 868
kkkdvpevtrVtslemfhg.ldea...........vaGdnaGlivagigl
+ ++t V+ l+m+ ++l+e + +++ + ++v+G++ G+ v ++l
Y54F10BM.2 869 GA----ITTQVRELLMP-KpLKELrvkneyihykeVKGAR-GVKVLAKNL 912
kdaaikrGdvla<-*
+ + +G +
Y54F10BM.2 913 EK--VLAGLPIY 922
[output cut off at A = 10 top alignments]