Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y54G11A.13
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Query: Y54G11A.13 CE22478 catalase status:Partially_confirmed TN:CAD31698 protein_id:CAD31698.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
catalase Catalase 921.1 3.1e-273 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
catalase 1/1 39 423 .. 1 390 [] 921.1 3.1e-273
Alignments of top-scoring domains:
catalase: domain 1 of 1, from 39 to 423: score 921.1, E = 3.1e-273
*->TtnqGaPvadnqnSlTaGprGPlLLqDyhLlEklaHFDRErIPERvV
Tt++GaP++ + + lTaG rGP+L+qD++ +++aHFDRErIPERvV
Y54G11A.13 39 TTSNGAPIYSKTAVLTAGRRGPMLMQDIVYMDEMAHFDRERIPERVV 85
HAkGAGAfGyFeVThDitkyTkAkflsevGkkTpvfvRFSTVaGekGSAD
HAkG GA+GyFeVThDitky+kA+++ +vGk+Tp++vRFSTVaGe+GSAD
Y54G11A.13 86 HAKGGGAHGYFEVTHDITKYCKADMFNKVGKQTPLLVRFSTVAGESGSAD 135
TvRDpRGFAvKFYTeEGNyDLVGNNtPVFFiRDpiKFPdfIHaqKrnPrt
TvRDpRGF++KFYTeEGN+DLVGNNtP+FFiRD+i FP fIHa+KrnP+t
Y54G11A.13 136 TVRDPRGFSLKFYTEEGNWDLVGNNTPIFFIRDAIHFPNFIHALKRNPQT 185
hlrdaaaAadmfWDFlsllPESlHqVtilfsDrGiPasYRhMeGfGsHTf
h+rd +++ +DF+ ++PES+HqV++l+sDrGiP+++R M+G+G HTf
Y54G11A.13 186 HMRD----PNALFDFWMNRPESIHQVMFLYSDRGIPDGFRFMNGYGAHTF 231
kwvNaeGeavyVKFHfKtdqGiknLsddeAakiaGedpDyhqrDLfeaIe
k+vN+eG +y+KFHfK+ qG knL+ +A k+a +dpDy+ rDLf+aIe
Y54G11A.13 232 KMVNKEGNPIYCKFHFKPAQGSKNLDPTDAGKLASSDPDYAIRDLFNAIE 281
aGdYPeWtLyiQvMteedakkydFnpfDlTKvWPeedyPlieVGklvLNR
++PeW+++iQvMt+e+a+k +FnpfD+TKvWP++dyPlieVGk+vLNR
Y54G11A.13 282 SRNFPEWKMFIQVMTFEQAEKWEFNPFDVTKVWPHGDYPLIEVGKMVLNR 331
NPdNfFAEvEQaAFsPahlVPGiepSpDkmLQGRLFsYaDThRyRLGGpN
N++N+FAEvEQaAF+Pah+VPGie+SpDkmLQGR+FsY+DTh +RLG pN
Y54G11A.13 332 NVKNYFAEVEQAAFCPAHIVPGIEFSPDKMLQGRIFSYTDTHYHRLG-PN 380
yhqlPVNrPk.cpvhNnqrDGamrvdgndgsavnYePNSfdgpq<-*
y qlPVN+P++++ h +qrDGam +++ a+nY+PNSf g++
Y54G11A.13 381 YIQLPVNCPYrSRAHTTQRDGAMAYESQGD-APNYFPNSFRGYR 423