Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y54G11A.5a
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Query: Y54G11A.5a CE22476 locus:ctl-2 Catalase status:Confirmed SW:Q27487 protein_id:CAA22451.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
catalase Catalase 960.5 4.3e-285 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
catalase 1/1 24 408 .. 1 390 [] 960.5 4.3e-285
Alignments of top-scoring domains:
catalase: domain 1 of 1, from 24 to 408: score 960.5, E = 4.3e-285
*->TtnqGaPvadnqnSlTaGprGPlLLqDyhLlEklaHFDRErIPERvV
Tt++GaP++ + + lTaG rGP+L+qD++ +++aHFDRErIPERvV
Y54G11A.5a 24 TTSNGAPIYSKTAVLTAGRRGPMLMQDVVYMDEMAHFDRERIPERVV 70
HAkGAGAfGyFeVThDitkyTkAkflsevGkkTpvfvRFSTVaGekGSAD
HAkGAGA+GyFeVThDi+ky+kA+++ +vGk+Tp+++RFSTV+Ge+GSAD
Y54G11A.5a 71 HAKGAGAHGYFEVTHDISKYCKADIFNKVGKQTPLLIRFSTVGGESGSAD 120
TvRDpRGFAvKFYTeEGNyDLVGNNtPVFFiRDpiKFPdfIHaqKrnPrt
T+RDpRGFA KFYTeEGN+DLVGNNtP+FFiRDpi FP fIH+qKrnP+t
Y54G11A.5a 121 TARDPRGFAIKFYTEEGNWDLVGNNTPIFFIRDPIHFPNFIHTQKRNPQT 170
hlrdaaaAadmfWDFlsllPESlHqVtilfsDrGiPasYRhMeGfGsHTf
hl+d ++m++DF+ ++PE+lHqV++lfsDrG+P++YRhM+G+GsHTf
Y54G11A.5a 171 HLKD----PNMIFDFWLHRPEALHQVMFLFSDRGLPDGYRHMNGYGSHTF 216
kwvNaeGeavyVKFHfKtdqGiknLsddeAakiaGedpDyhqrDLfeaIe
k+vN++G+a+yVKFHfK++qG+knL+++ A ++a +dpDy+ rDLf+aIe
Y54G11A.5a 217 KMVNKDGKAIYVKFHFKPTQGVKNLTVEKAGQLASSDPDYSIRDLFNAIE 266
aGdYPeWtLyiQvMteedakkydFnpfDlTKvWPeedyPlieVGklvLNR
+Gd+P W+++iQvMt+e+a+k +FnpfD+TKvWP++dyPlieVGk+vLNR
Y54G11A.5a 267 KGDFPVWKMFIQVMTFEQAEKWEFNPFDVTKVWPHGDYPLIEVGKMVLNR 316
NPdNfFAEvEQaAFsPahlVPGiepSpDkmLQGRLFsYaDThRyRLGGpN
NP N+FAEvEQ+AF+Pah+VPGie+SpDkmLQGR+FsY+DTh +RLG pN
Y54G11A.5a 317 NPRNYFAEVEQSAFCPAHIVPGIEFSPDKMLQGRIFSYTDTHFHRLG-PN 365
yhqlPVNrPk.cpvhNnqrDGamrvdgndgsavnYePNSfdgpq<-*
y qlPVN+P++++ hN+qrDGam d ++ a+n +PNSf+ +
Y54G11A.5a 366 YIQLPVNCPYrSRAHNTQRDGAMAYDNQQH-APNFFPNSFNYGK 408