Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y54G11A.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y54G11A.6 CE30713 locus:ctl-1 catalase status:Confirmed TN:CAA22458 protein_id:CAA22458.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
catalase Catalase 926.6 6.8e-275 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
catalase 1/1 24 408 .. 1 390 [] 926.6 6.8e-275
Alignments of top-scoring domains:
catalase: domain 1 of 1, from 24 to 408: score 926.6, E = 6.8e-275
*->TtnqGaPvadnqnSlTaGprGPlLLqDyhLlEklaHFDRErIPERvV
Tt++GaP++ + + lTaG rGP+L+qD++ +++aHFDRErIPERvV
Y54G11A.6 24 TTSNGAPIYSKTAVLTAGRRGPMLMQDVVYMDEMAHFDRERIPERVV 70
HAkGAGAfGyFeVThDitkyTkAkflsevGkkTpvfvRFSTVaGekGSAD
HAkGAGA+GyFeVThDitky+kA+++ +vGk+Tp++vRFSTVaGe+GSAD
Y54G11A.6 71 HAKGAGAHGYFEVTHDITKYCKADMFNKVGKQTPLLVRFSTVAGESGSAD 120
TvRDpRGFAvKFYTeEGNyDLVGNNtPVFFiRDpiKFPdfIHaqKrnPrt
TvRDpRGF++KFYTeEGN+DLVGNNtP+FFiRD+i FP fIHa+KrnP+t
Y54G11A.6 121 TVRDPRGFSLKFYTEEGNWDLVGNNTPIFFIRDAIHFPNFIHALKRNPQT 170
hlrdaaaAadmfWDFlsllPESlHqVtilfsDrGiPasYRhMeGfGsHTf
h+rd +++ +DF+ ++PES+HqV++l+sDrGiP+++R M+G+G HTf
Y54G11A.6 171 HMRD----PNALFDFWMNRPESIHQVMFLYSDRGIPDGFRFMNGYGAHTF 216
kwvNaeGeavyVKFHfKtdqGiknLsddeAakiaGedpDyhqrDLfeaIe
k+vN+eG +y+KFHfK+ qG knL+ +A k+a +dpDy+ rDLf+aIe
Y54G11A.6 217 KMVNKEGNPIYCKFHFKPAQGSKNLDPTDAGKLASSDPDYAIRDLFNAIE 266
aGdYPeWtLyiQvMteedakkydFnpfDlTKvWPeedyPlieVGklvLNR
++PeW+++iQvMt+e+a+k +FnpfD+TKvWP++dyPlieVGk+vLNR
Y54G11A.6 267 SRNFPEWKMFIQVMTFEQAEKWEFNPFDVTKVWPHGDYPLIEVGKMVLNR 316
NPdNfFAEvEQaAFsPahlVPGiepSpDkmLQGRLFsYaDThRyRLGGpN
N++N+FAEvEQaAF+Pah+VPGie+SpDkmLQGR+FsY+DTh +RLG pN
Y54G11A.6 317 NVKNYFAEVEQAAFCPAHIVPGIEFSPDKMLQGRIFSYTDTHYHRLG-PN 365
yhqlPVNrPk.cpvhNnqrDGamrvdgndgsavnYePNSfdgpq<-*
y qlPVN+P++++ h +qrDGam +++ a+nY+PNSf g++
Y54G11A.6 366 YIQLPVNCPYrSRAHTTQRDGAMAYESQGD-APNYFPNSFRGYR 408