hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y56A3A.32
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Query:  Y56A3A.32  CE31841    status:Partially_confirmed TR:Q9U229 protein_id:CAB60511.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
pyr_redox       Pyridine nucleotide-disulphide oxidor   109.3    9.6e-31   1
Peptidase_M17_N Cytosol aminopeptidase family, N-term     6.2        2.3   1
nanE            Putative N-acetylmannosamine-6-phosph     5.0        4.1   1
Na_sulph_symp   Sodium:sulfate symporter transmembran     1.5        8.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Na_sulph_symp     1/1      79   103 ..    54    78 ..     1.5      8.6
nanE              1/1     454   467 ..   187   200 .]     5.0      4.1
Peptidase_M17_N   1/1     500   529 ..     1    29 [.     6.2      2.3
pyr_redox         1/1     241   558 ..     1   344 []   109.3  9.6e-31

Alignments of top-scoring domains:
Na_sulph_symp: domain 1 of 1, from 79 to 103: score 1.5, E = 8.6
                   *->gviALiaislsavltgtlsfeneel<-*
                      g++A+i+++l+av+++t+ f +e +
   Y56A3A.32    79    GAVAFIGLTLIAVVIKTDVFKKEDS    103

nanE: domain 1 of 1, from 454 to 467: score 5.0, E = 4.1
                   *->leeItqwFieAiks<-*
                      +e+I+q+ ieAi +
   Y56A3A.32   454    PEHIAQKSIEAIRK    467

Peptidase_M17_N: domain 1 of 1, from 500 to 529: score 6.2, E = 2.3
                   *->vvgvvakegde.epskltpsaeklDkaleG<-*
                      +  vv+  g+e+++ ++ +s++k+D++l+G
   Y56A3A.32   500    TDLVVVATGEEpNSEIIEASGLKIDEKLGG    529

pyr_redox: domain 1 of 1, from 241 to 558: score 109.3, E = 9.6e-31
                   *->dvvIIGgGpAGlaAAiraaragflGrkrlkvalvEkepplkrgtlGG
                       +vIIG+G A++ A + +++ +++    +kv+++ +ep
   Y56A3A.32   241    EYVIIGSGTAAYYASLSIRA-KQAE---AKVLMIGEEP--------- 274

                   TClNvgciprkpllkaalvgeeakd.a.f...........i.vggpeldl
                         ++ r+pl+k+ + +++     ++  ++ ++++++i  + + ++
   Y56A3A.32   275 ----ELPYNRPPLSKELWWYGDETSaTkLaytplsgkkrdIfYEVDGFFV 320

                   kpleqy..kekgvevllgtevt.ldkknkvvitvlgdgetltydkliiAT
                    p++  + +  gv +l+g +++++  ++k+v  +l+dg+t+ ydkl+iAT
   Y56A3A.32   321 SPEDLPkaVHGGVALLRGRKAVkICEEDKKV--ILEDGTTIGYDKLLIAT 368

                   GarprippipGvpg.flfaglegvfglrtsddAlalrevp...kgkrvvV
                   G rp++  +   + +   +    + ++    d  +++  + ++  ++v +
   Y56A3A.32   369 GVRPKKEQVF-EEAsE--EAKQKITYFHYPADFKRVERGLadkSVQKVTI 415

                   vGGGyIGlElAaalarlG...aeVTvverrdrllprkddeiaaallekll
                   +G G+ + El++  +r  ++++eV+ v     +    ++e +a++  + +
   Y56A3A.32   416 IGNGLLASELSYSIKRKYgenVEVHQVFEEKYPAEDILPEHIAQKSIEAI 465

                   eegGievllgtkgvteiegdgdgglvegvkvkvvktdgerdavedegeel
                   ++gG++v+ + k v+++++  +        v+++++d         g+el
   Y56A3A.32   466 RKGGVDVRAEQK-VEGVRKCCK-------NVVLKLSD---------GSEL 498

                   eaDlVlvAiGrrPntellglegaGiGleldrrGiGgIvVDeylrTsgtrT
                    +DlV+vA+G  Pn+e ++++g    l++d++  Gg+  D+ l +
   Y56A3A.32   499 RTDLVVVATGEEPNSEIIEASG----LKIDEKL-GGVRADKCLKVG---- 539

                   svpgIyAaGDvaggplrlahv<-*
                     ++++AaG +a++++ + +
   Y56A3A.32   540 --ENVWAAGAIATFEDGVLGA    558

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