Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y56A3A.12b
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y56A3A.12b CE24468 status:Partially_confirmed TR:Q9U217
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Amidase Amidase 233.0 4.3e-66 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Amidase 1/3 79 252 .. 1 179 [. 198.0 1.4e-55
Amidase 2/3 331 364 .. 296 330 .. 7.9 0.23
Amidase 3/3 437 565 .. 393 521 .] 26.9 1.1e-06
Alignments of top-scoring domains:
Amidase: domain 1 of 3, from 79 to 252: score 198.0, E = 1.4e-55
*->ElveaflarieaanpklNvtafvtvffeeAlaaAkaadkrrarkrgg
++ af r+ +n ++N ++t + eA A+a+d+++a + g
Y56A3A.12b 79 TVLCAFVWRAIDVNSEIN---CITEVIREAFNTAEALDDNYA--QTG 120
ekgPLhGvPialKDnidvkGvpTTaGskalegypppyDAtvVerLraaGA
ekg L+G+P+++K n+ +++++T G + l +p ++ + V+ L + GA
Y56A3A.12b 121 EKGQLFGLPFSVKSNFYMENYDVTVGLAKLLEQPKTTTCPMVQFLSDQGA 170
vilGKTNmdEfamgsttensafGpTrNPwdlsrtpGGSSGGSAAaVAagl
v+++ TN+++ +++++++n+++G+T NPwd srtpGGSSGG+AA++Aag+
Y56A3A.12b 171 VPFCLTNVPQGLLSYVSSNPIYGTTKNPWDFSRTPGGSSGGEAALLAAGG 220
vplAiGtDTGGSIRiPAafCGlvGlKPTyGRv<-*
+ ++iG+D +GS RiPAafCGlv lKPT +R+
Y56A3A.12b 221 AAFGIGSDLAGSLRIPAAFCGLVTLKPTQDRL 252
Amidase: domain 2 of 3, from 331 to 364: score 7.9, E = 0.23
*->pevdeavekaaaaLeelGhhevvevslpslkealp<-*
p +++ave+++++L ++G h+vve +l ++ e +p
Y56A3A.12b 331 PSNRRAVEETVKSLQAKG-HQVVELKLADVSEEFP 364
Amidase: domain 3 of 3, from 437 to 565: score 26.9, E = 1.1e-06
*->sagysdayeylkaqkvrrllrrefdglFeehgvDvLisPTtptpApr
sa++sd +++++ q+ ++ ++ +++ ++++D+Li+P++ tpA +
Y56A3A.12b 437 SAYNSDLAACRQNQENTDSYKLQWIRYWKSKKIDALICPSFITPAQP 483
igepdkliseaddytvlyllddftantvPaNlaGlPaiS.vPvgfspeds
++p l ++ t l++ +d +a++vP++ + + + ++ gfs e +
Y56A3A.12b 484 FEYPAQLS-NGAFITGLFNMLDVPAGVVPVSPVNQKDVDqLIDGFSTEGD 532
.wdalvk.eylpegyvGLPvGlQiiGkpgdeetLL<-*
+ + ++ + g+ GLP +Q++ p+ ee++L
Y56A3A.12b 533 lLLKKQReAAR--GTTGLPNAVQVVTLPNCEEMCL 565