Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y57A10A.30a
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Query: Y57A10A.30a CE25509 locus:ife-5 status:Predicted SW:P56570 protein_id:CAB60769.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IF4E Eukaryotic initiation factor 4E 357.9 1.1e-103 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IF4E 1/1 24 236 .. 1 248 [] 357.9 1.1e-103
Alignments of top-scoring domains:
IF4E: domain 1 of 1, from 24 to 236: score 357.9, E = 1.1e-103
*->etsepsteetPSirriDphdgDdaEevevpsekalpteaesvsaevs
et+ ++t++ +++ a++t e +
Y57A10A.30 24 ETKRSKTQP-------------------LATVPADMT-------ELT 44
aPeehllkHPLqrnWTlWYlkpdrgkrfksesWednlkpvttFdTVEeFW
P +PLqrnW++W+l++dr+ sW+d+lk+v+tF+TV eFW
Y57A10A.30 45 TP-----IYPLQRNWSWWFLNDDRNA-----SWQDRLKKVYTFNTVPEFW 84
aLYnhIkrPSeLplgsDyhlFKdGIrPmWEDpaNknGGKWlitlsKgrsp
a+Y I +PS+L++ +Dy++F+d+I+P+WE p+N GG+Wli ++Kg++p
Y57A10A.30 85 AFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTP 134
edLDriWLetLLAlIGEQFDedgdeICGAVvnVRgkgdkISiWTknAsde
e LD WLe+LLAlIGEQF +d+++ICG V+nVRg+g+kIS+WTkn++d+
Y57A10A.30 135 EVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDD 184
eaqlrIGkklKevLnlP.SkiH.lPdndvleYkvHdDskkktRSstrktr
++++rIG +lKe+L+++ Sk H++P++dv+ Y++H + kkt s k +
Y57A10A.30 185 DTNMRIGVVLKEKLMAAaSKAHsKPLFDVIHYQTHRNCVKKT-TSALKYK 233
ytl<-*
++l
Y57A10A.30 234 FSL 236