Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y57A10A.30b
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Query: Y57A10A.30b CE22608 locus:ife-5 status:Confirmed TR:Q9NIF2 protein_id:CAB55035.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IF4E Eukaryotic initiation factor 4E 353.8 1.9e-102 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IF4E 1/1 7 197 .. 49 248 .] 353.8 1.9e-102
Alignments of top-scoring domains:
IF4E: domain 1 of 1, from 7 to 197: score 353.8, E = 1.9e-102
*->PeehllkHPLqrnWTlWYlkpdrgkrfksesWednlkpvttFdTVEe
P +PLqrnW++W+l++dr+ sW+d+lk+v+tF+TV e
Y57A10A.30 7 P-----IYPLQRNWSWWFLNDDRNA-----SWQDRLKKVYTFNTVPE 43
FWaLYnhIkrPSeLplgsDyhlFKdGIrPmWEDpaNknGGKWlitlsKgr
FWa+Y I +PS+L++ +Dy++F+d+I+P+WE p+N GG+Wli ++Kg+
Y57A10A.30 44 FWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGK 93
spedLDriWLetLLAlIGEQFDedgdeICGAVvnVRgkgdkISiWTknAs
+pe LD WLe+LLAlIGEQF +d+++ICG V+nVRg+g+kIS+WTkn++
Y57A10A.30 94 TPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCN 143
deeaqlrIGkklKevLnlP.SkiH.lPdndvleYkvHdDskkktRSstrk
d+++++rIG +lKe+L+++ Sk H++P++dv+ Y++H + kkt s k
Y57A10A.30 144 DDDTNMRIGVVLKEKLMAAaSKAHsKPLFDVIHYQTHRNCVKKT-TSALK 192
trytl<-*
+++l
Y57A10A.30 193 YKFSL 197