Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y57G11C.15
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Query: Y57G11C.15 CE14954 protein transport protein SEC61 alpha subunit status:Partially_confirmed TR:O18239 protein_id:CAB16516.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
secY eubacterial secY protein 34.6 2.4e-09 3
MatE MatE 9.6 0.24 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
secY 1/3 75 96 .. 1 22 [. 11.6 0.013
secY 2/3 149 187 .. 93 130 .. 4.1 2.1
MatE 1/1 289 313 .. 1 25 [. 9.6 0.24
secY 3/3 266 457 .. 193 384 .] 26.2 6.8e-07
Alignments of top-scoring domains:
secY: domain 1 of 3, from 75 to 96: score 11.6, E = 0.013
*->SiFALGImPYITASIIvQLLtv<-*
+++ LGI+P++T ++I+QLL +
Y57G11C.15 75 TLMELGISPIVTSGLIMQLLAG 96
secY: domain 2 of 3, from 149 to 187: score 4.1, E = 2.1
*->llivlaLttGsmlvMWlgEqITe.kGIGNGiSLlIFaGI<-*
lliv++L+ +++v+ l+E+ +++G G+GiSL+I +I
Y57G11C.15 149 LLIVVQLVIAGLIVLLLDELLQKgYGLGSGISLFIATNI 187
MatE: domain 1 of 1, from 289 to 313: score 9.6, E = 0.24
*->lPiilanllqslyflvdtlfvghlG<-*
+Piil ++l+s +++++++++g++G
Y57G11C.15 289 IPIILQSALVSNLYVISQMLAGKFG 313
secY: domain 3 of 3, from 266 to 457: score 26.2, E = 6.8e-07
*->qlgrrrvggtstYLPLKvNqAGViPVIFASsilllPatlgqflnsqd
++ ++r++g+ + +P+K+ + ++iP+I+ S++ + + q l +
Y57G11C.15 266 PIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAGKF 312
gsipaflsnvn................wvrwianylspns.i.Nvisilp
g +n+ + ++ +++++ ++ + + +ylsp+ +++ ++ ++
Y57G11C.15 313 G------GNFFinllgtwsdntgyrsyPTGGLCYYLSPPEsLgHIFEDPI 356
tsilylllYliLIIfFsyFYtsTiqlNPeeiAeNLKKmGsfIPGiRPGvk
+ i+y++++l + fFs + ++++A++LK + ++ G R
Y57G11C.15 357 HCIIYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHREK-S 405
aTekYlekvlnRLTfvGSlFLaliAilPsileallgvdlpvffglGGTSL
++ + l ++++ +G+l ++ + + +++++a+ g +GT++
Y57G11C.15 406 MIHE-LNRYIPTAAAFGGLCIGALSVTADFMGAI-G---------SGTGI 444
LIvVGVaidTvkQ<-*
L+ V ++++ +
Y57G11C.15 445 LLAVTIIYQYFEI 457