Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y57G7A.6
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Query: Y57G7A.6 CE19635 status:Partially_confirmed TR:O76623 protein_id:AAC26299.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WSN Domain of unknown function 87.7 4.4e-23 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WSN 1/1 48 116 .. 1 72 [] 87.7 4.4e-23
Alignments of top-scoring domains:
WSN: domain 1 of 1, from 48 to 116: score 87.7, E = 4.4e-23
*->skLqtvienlsilaRVtNAIsLqaglingsiksddvIaELLniGtin
++ +t +++l ++aR+++AI++ +g+++gsi++d+vIaELLn i+
Y57G7A.6 48 EDPATLFKKLPAVARLITAIAIINGFSDGSIPADPVIAELLN---ID 91
psqlselinvdlkkiveglngLkei<-*
+++l++l++++++ +++++++L+++
Y57G7A.6 92 TASLQQLEKFNKTSVDKFMESLGSA 116