Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y57G7A.6
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Query:  Y57G7A.6  CE19635    status:Partially_confirmed TR:O76623 protein_id:AAC26299.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
WSN      Domain of unknown function                      87.7    4.4e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WSN        1/1      48   116 ..     1    72 []    87.7  4.4e-23

Alignments of top-scoring domains:
WSN: domain 1 of 1, from 48 to 116: score 87.7, E = 4.4e-23
                   *->skLqtvienlsilaRVtNAIsLqaglingsiksddvIaELLniGtin
                      ++ +t +++l ++aR+++AI++ +g+++gsi++d+vIaELLn   i+
    Y57G7A.6    48    EDPATLFKKLPAVARLITAIAIINGFSDGSIPADPVIAELLN---ID 91

                   psqlselinvdlkkiveglngLkei<-*
                   +++l++l++++++ +++++++L+++
    Y57G7A.6    92 TASLQQLEKFNKTSVDKFMESLGSA    116



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