Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y59A8A.1
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Query: Y59A8A.1 CE26200 status:Partially_confirmed TR:Q9GS00 protein_id:CAC14399.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PCI PCI domain 75.1 5.2e-20 1
TraB TraB family 2.9 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PCI 1/1 428 497 .. 1 75 [] 75.1 5.2e-20
TraB 1/1 490 505 .. 221 236 .] 2.9 8.6
Alignments of top-scoring domains:
PCI: domain 1 of 1, from 428 to 497: score 75.1, E = 5.2e-20
*->akhveeLrrkirelnLlqlaetyssapyssislselAellglsveev
+ +v+eL++kir +++lq+++ pys+i ++++Ae++g+s++e+
Y59A8A.1 428 SRNVDELFEKIRQKCVLQYLQ-----PYSTIKMATMAEAVGMSSAEL 469
EkllsklIldgrihakIDqvngiveves<-*
l +lI++++++ kIDq +giv++ +
Y59A8A.1 470 QLSLLELIEQKHVSLKIDQNEGIVRILD 497
TraB: domain 1 of 1, from 490 to 505: score 2.9, E = 8.6
*->rGIeryLkklsegapi<-*
+GI+r+L ++ e+a++
Y59A8A.1 490 EGIVRILDERDENAIL 505