Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y59A8A.1
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Query:  Y59A8A.1  CE26200    status:Partially_confirmed TR:Q9GS00 protein_id:CAC14399.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
PCI      PCI domain                                      75.1    5.2e-20   1
TraB     TraB family                                      2.9        8.6   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PCI        1/1     428   497 ..     1    75 []    75.1  5.2e-20
TraB       1/1     490   505 ..   221   236 .]     2.9      8.6

Alignments of top-scoring domains:
PCI: domain 1 of 1, from 428 to 497: score 75.1, E = 5.2e-20
                   *->akhveeLrrkirelnLlqlaetyssapyssislselAellglsveev
                      + +v+eL++kir +++lq+++     pys+i ++++Ae++g+s++e+
    Y59A8A.1   428    SRNVDELFEKIRQKCVLQYLQ-----PYSTIKMATMAEAVGMSSAEL 469

                   EkllsklIldgrihakIDqvngiveves<-*
                      l +lI++++++ kIDq +giv++ +
    Y59A8A.1   470 QLSLLELIEQKHVSLKIDQNEGIVRILD    497

TraB: domain 1 of 1, from 490 to 505: score 2.9, E = 8.6
                   *->rGIeryLkklsegapi<-*
                      +GI+r+L ++ e+a++
    Y59A8A.1   490    EGIVRILDERDENAIL    505



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