Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y59A8B.2
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Query: Y59A8B.2 CE26210 status:Partially_confirmed TR:Q9GRZ4 protein_id:CAC14405.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UCH Ubiquitin carboxyl-terminal hydrolase 272.7 1.1e-94 1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.4 0.24 1
PHD PHD-finger 3.2 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C3HC4 1/1 214 235 .. 34 50 .] 6.4 0.24
PHD 1/1 227 238 .. 40 51 .] 3.2 7.8
UCH 1/1 21 354 .. 1 456 [] 272.7 1.1e-94
Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 214 to 235: score 6.4, E = 0.24
*->ClerWls.......gnttvkCplC<-*
Cl++++s+++ +++ ++ Cp C
Y59A8B.2 214 CLRSHFSqtkldgdSRWN--CPKC 235
PHD: domain 1 of 1, from 227 to 238: score 3.2, E = 7.8
*->egkWlCpeCtpk<-*
+ W Cp+C+++
Y59A8B.2 227 DSRWNCPKCKEP 238
UCH: domain 1 of 1, from 21 to 354: score 272.7, E = 1.1e-94
*->egpvGLvNlGNTCYmNSvLQcLfhipelrdyllsnrhylprinnsnp
+g+vGL N+GNTC+m+++LQcLf +p l++ + + +n++++
Y59A8B.2 21 PGAVGLFNMGNTCFMSATLQCLFQTPGLAEVFTKK-VFVSKVNTQSR 66
lgskgqllcaladlfkslqsnqyssppseaelslfeSnavsalnknskpe
lgskg ++ +a l ++++++
Y59A8B.2 67 LGSKGVISAGFASLSDMIWNGTF--------------------------- 89
esisPtqflktlgkinpsFselegyk.l.i.qQqDAqEfllfLLdgLhED
++i P +fl++++ y++l+ ++Q+DA Ef fLLd+LhED
Y59A8B.2 90 TAIRPSRFLQLFSDT--------VYQpLsDgRQHDASEFQIFLLDALHED 131
lNrvakkpyneehepgldlalee.eeadelkdseaseeawknkstrnesl
+N+++ e++++++ +++ + ++ k++ + s+
Y59A8B.2 132 TNQAQRISF-------------EqNYHGGAGIAKEAADFLKKHYQFSLSP 168
isdlFqGqlesrikCaleCgkvsvtyepFldLslpikpkeasdspksLee
+++l + ++ s+i+C l+Cg +s+t+e + +s+ i +s s +sL+
Y59A8B.2 169 VNRLLGSITVSEIRC-LTCGASSATFEENTIISVEI----PSNSSCSLDM 213
cLkaFtkeEiLKviegenkyyCdkcgkkqeasKklkisrLPpiLtihLkR
cL++ ++ +L +g+ + C+kc++ + +++++k+++ Pp+ +ihLkR
Y59A8B.2 214 CLRSHFSQTKL---DGDSRWNCPKCKEPRASTRTSKLWQPPPVMIIHLKR 260
FsydgetssnimKindrvefPleeLDlspylnqktnkeraaaeansleee
F + K+ v+f +D+ pyl
Y59A8B.2 261 FALFNGDFE---KNTAAVTFETARFDVRPYLH------------------ 289
qqsvnadegnnqeeseestksqeegenpptkYeLvaVvvHsGsslsgGHY
e + +Y+L+a H G l++GHY
Y59A8B.2 290 ----------------------EMAPAEKPVYKLYAATLHNG-RLNSGHY 316
iayikkldnnkWykFDDsvetVgdwkvvsvvseeevlkesgggtatsesk
+a++ +l+ +kW++FDDs +V ++++ +v+ +
Y59A8B.2 317 TAVASHLRSDKWLRFDDS--VV------TPCENFKVDPSL---------- 348
rlkryrwAYiLFY<-*
AYiLFY
Y59A8B.2 349 -------AYILFY 354