Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y59E9AR.1
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Query: Y59E9AR.1 CE22666 status:Partially_confirmed TR:Q9N2M1 protein_id:AAF60828.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 126.6 7.8e-36 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MSP_domain 1/1 12 129 .. 1 138 [] 126.6 7.8e-36
Alignments of top-scoring domains:
MSP_domain: domain 1 of 1, from 12 to 129: score 126.6, E = 7.8e-36
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
+++++P +++ vf + p+d++ +t++++++N s +ri + +KtTn+
Y59E9AR.1 12 DIQTQPGTKI-VFNA--PYDDK-HTYHIKVINSSARRIGYGIKTTNM 54
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
k++ V+P++G+l+P+e v +av+ +++f+ ++ d+n+d+++v+
Y59E9AR.1 55 KRLGVDPPCGVLDPKEAVLLAVS------CDAFAFGQE--DTNNDRITVE 96
yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
++++p+++a+ +++ ++++ +++ v+++++p++++
Y59E9AR.1 97 WTNTPDGAAK------QFRREWFQGDGM--VRRKNLPIEYN 129