Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y59H11AM.2
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Query: Y59H11AM.2 CE25519 status:Predicted
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Rhodanese Rhodanese-like domain 30.8 7e-08 1
Ribosomal_L2 Ribosomal Proteins L2, RNA binding domai 7.0 2.6 1
Sec61_beta Sec61beta family 5.4 7.1 1
AIRS_C AIR synthase related protein, C-terminal 2.5 9.8 1
U79_P34 HSV U79 / HCMV P34 2.5 5.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
U79_P34 1/1 116 127 .. 1 21 [. 2.5 5.2
Rhodanese 1/1 8 147 .. 1 132 [] 30.8 7e-08
Ribosomal_L2 1/1 244 256 .. 69 81 .] 7.0 2.6
AIRS_C 1/1 249 270 .. 1 29 [. 2.5 9.8
Sec61_beta 1/1 244 281 .. 15 47 .] 5.4 7.1
Alignments of top-scoring domains:
U79_P34: domain 1 of 1, from 116 to 127: score 2.5, E = 5.2
*->MyAedrRGsPivvvRkYgTFd<-*
M+A R+Y+TF+
Y59H11AM.2 116 MAAAS---------RAYWTFR 127
Rhodanese: domain 1 of 1, from 8 to 147: score 30.8, E = 7e-08
*->tagelkallesapkliliDvRspef.Ge...................
+++++ ++ + ++ ++D+ + f+ + + + + + ++ + + +
Y59H11AM.2 8 EPKWVVQNFG---NIRILDASWT-FkPKadiaeykakyynkfgvgmn 50
...ryeyegGHIpgAvNvpleeeiealldrsgilpdieklhllkdpeela
+ + ey HI gA +++ i+ + ++ ++ +l +pee+
Y59H11AM.2 51 elkNPEYLAEHINGAAHFN--FDIAYYPSENERF-------TLYTPEEFS 91
klfgelgsskdkrvivycrsgrdllrnrrsalaalllkklgypeVyiLkG
++ +lg+++ +++++y r+ + ++ + +a+++++ gy++V++L+G
Y59H11AM.2 92 SYVKRLGVFNGDHLVIYGRGKD--GGMAAASRAYWTFRYYGYTTVSVLNG 139
GykeWlak<-*
G ++++
Y59H11AM.2 140 GIEAFKLA 147
Ribosomal_L2: domain 1 of 1, from 244 to 256: score 7.0, E = 2.6
*->apeGlkvGdtivs<-*
a++G+kvGdt+v+
Y59H11AM.2 244 AAKGIKVGDTVVI 256
AIRS_C: domain 1 of 1, from 249 to 270: score 2.5, E = 9.8
*->kpGDvlillgstgkktgrsGlhGnglslv<-*
k+GD ++ + +Gl +++++l+
Y59H11AM.2 249 KVGDTVVIGCG-------IGLSASAIWLA 270
Sec61_beta: domain 1 of 1, from 244 to 281: score 5.4, E = 7.1
*->dspGLkVdPvvVlvlSlgFiasViaLH.....ifaKlv<-*
+++G+kV+ +vV++ ++g +as i L +++i+aKl+
Y59H11AM.2 244 AAKGIKVGDTVVIGCGIGLSASAIWLAaarsgIVAKLY 281