Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y5F2A.1
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Query: Y5F2A.1 CE19022 Transthyretin-like family status:Confirmed SW:P55955 protein_id:CAA21645.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF290 Transthyretin-like family 111.6 9.4e-31 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF290 1/1 20 122 .. 1 111 [. 111.6 9.4e-31
Alignments of top-scoring domains:
DUF290: domain 1 of 1, from 20 to 122: score 111.6, E = 9.4e-31
*->rdQsvaVkGrLiCggkPaanvkVkLydkdtGpelgiidpDdLLdetk
r Q v+VkG+ C++k +anv+V+Ly+kdt +dpDdLLd +k
Y5F2A.1 20 RLQNVTVKGVAVCNKKRLANVEVQLYEKDT------LDPDDLLDTKK 60
TdenGeFqLsGsttEittINPDPkLnIyHdCndggkepCqRklkitIPke
Td++GeF+++G+++E +I P+L I H Cn+++ + C R ++++P++
Y5F2A.1 61 TDAEGEFSVYGEEDETHAI--APYLLITHSCNPSKPN-CVRIGRYLVPED 107
yitsGk.tpkktFDI<-*
i ++++++ t DI
Y5F2A.1 108 KIGGTYdMTYVTLDI 122