Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y5F2A.1
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Query:  Y5F2A.1  CE19022   Transthyretin-like family status:Confirmed SW:P55955 protein_id:CAA21645.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF290   Transthyretin-like family                      111.6    9.4e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF290     1/1      20   122 ..     1   111 [.   111.6  9.4e-31

Alignments of top-scoring domains:
DUF290: domain 1 of 1, from 20 to 122: score 111.6, E = 9.4e-31
                   *->rdQsvaVkGrLiCggkPaanvkVkLydkdtGpelgiidpDdLLdetk
                      r Q v+VkG+  C++k +anv+V+Ly+kdt      +dpDdLLd +k
     Y5F2A.1    20    RLQNVTVKGVAVCNKKRLANVEVQLYEKDT------LDPDDLLDTKK 60

                   TdenGeFqLsGsttEittINPDPkLnIyHdCndggkepCqRklkitIPke
                   Td++GeF+++G+++E  +I   P+L I H Cn+++ + C R  ++++P++
     Y5F2A.1    61 TDAEGEFSVYGEEDETHAI--APYLLITHSCNPSKPN-CVRIGRYLVPED 107

                   yitsGk.tpkktFDI<-*
                    i  ++++++ t DI
     Y5F2A.1   108 KIGGTYdMTYVTLDI    122



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