Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y67D2.6
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Query: Y67D2.6 CE27311 status:Partially_confirmed SW:Q9BKQ8 protein_id:AAK27888.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HA2 Helicase associated domain (HA2) 162.3 8e-45 1
helicase_C Helicase conserved C-terminal domain 55.5 2.8e-14 1
AIG1 AIG1 family 13.1 0.019 1
SKI Shikimate kinase 9.0 0.21 1
ABC_tran ABC transporter 5.7 1.7 1
LpxK Tetraacyldisaccharide-1-P 4'-kinase 4.9 1.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ABC_tran 1/1 94 108 .. 1 16 [. 5.7 1.7
AIG1 1/1 94 108 .. 1 15 [. 13.1 0.019
SKI 1/1 94 108 .. 1 15 [. 9.0 0.21
LpxK 1/1 203 222 .. 342 361 .] 4.9 1.6
helicase_C 1/1 331 417 .. 4 72 .] 55.5 2.8e-14
HA2 1/1 475 570 .. 1 114 [] 162.3 8e-45
Alignments of top-scoring domains:
ABC_tran: domain 1 of 1, from 94 to 108: score 5.7, E = 1.7
*->GevlalvGpNGaGKST<-*
++ +vG++G+GKST
Y67D2.6 94 -RTIIIVGETGCGKST 108
AIG1: domain 1 of 1, from 94 to 108: score 13.1, E = 0.019
*->rnIVLVGRTGNGKSA<-*
r+I+ VG TG+GKS+
Y67D2.6 94 RTIIIVGETGCGKST 108
SKI: domain 1 of 1, from 94 to 108: score 9.0, E = 0.21
*->rnifLIGmmGaGKsT<-*
r+i+++G G+GKsT
Y67D2.6 94 RTIIIVGETGCGKST 108
LpxK: domain 1 of 1, from 203 to 222: score 4.9, E = 1.6
*->REvNPdrlekllklieqilk<-*
R +N d l+ ll++i qi++
Y67D2.6 203 RSCNTDILLGLLRKIIQIRN 222
helicase_C: domain 1 of 1, from 331 to 417: score 55.5, E = 2.8e-14
*->varlhGglsqeeReeilekFrngkskvLvaTdvaarGiDipdvnlVI
v++ +G l+++e+++++++ +g++kv+vaT++a+ +i+ip++ +VI
Y67D2.6 331 VVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITIPGICYVI 377
nydl..................pwnpesyiQRiGRaGRaG<-*
+ ++ + + ++ ++ ++ + +++s QR+GRaGR+
Y67D2.6 378 DTGYvklraqhaangvetlmrvTVSKASAEQRAGRAGRIR 417
HA2: domain 1 of 1, from 475 to 570: score 162.3, E = 8e-45
*->llrAlelLyaLGALDppkeekddgeLTppLGrqmaelPldPrLsKML
++++lelLyaLGA+D ++ +LT pLG qmae+Pl+P++sK+L
Y67D2.6 475 MINGLELLYALGAID------ETSQLTSPLGLQMAEFPLPPMHSKCL 515
llaaefgCldeiltIaAmLSvqspffgrpkekkeeearadearrkdslkF
l +aefgC+ e++tI+Am+++q+ f+++ +++++ ad +r+ kF
Y67D2.6 516 LKSAEFGCSTEMVTIVAMMQIQDVFITPYRQRHQ----ADVIRK----KF 557
aspsgregDehltllnv<-*
a++ egD h+t+lnv
Y67D2.6 558 AVE---EGD-HMTMLNV 570