hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y67D2.2
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Query:  Y67D2.2  CE27307    status:Partially_confirmed TR:Q9BKQ6 protein_id:AAK27886.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
UCH            Ubiquitin carboxyl-terminal hydrolase     77.2    1.1e-26   2
FARP           FMRFamide related peptide family           6.7        1.9   1
Galactosyl_T_2 Galactosyltransferase                      1.7        6.8   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
UCH              1/2      42    96 ..     1    63 [.    39.0  2.3e-13
FARP             1/1     166   176 ..     1    11 []     6.7      1.9
UCH              2/2     181   384 ..   213   398 ..    38.2  4.4e-13
Galactosyl_T_2   1/1     439   455 ..     1    19 [.     1.7      6.8

Alignments of top-scoring domains:
UCH: domain 1 of 2, from 42 to 96: score 39.0, E = 2.3e-13
                   *->egpvGLvNlGNTCYmNSvLQcLfhipelrdyllsnrhylprinnsnp
                          GL+N+GNTCYmN++LQ L ++p+++  l+s+        + ++
     Y67D2.2    42    RLVPGLANQGNTCYMNALLQGLASCPSFVGWLKSL--------KPQD 80

                   lgskgqllcaladlfk<-*
                    g  g ++ +l++l++
     Y67D2.2    81 IGIQGGFVDHLSNLLH    96

FARP: domain 1 of 1, from 166 to 176: score 6.7, E = 1.9
                   *->srdkrfmRFGR<-*
                      ++d++  RFGR
     Y67D2.2   166    EDDEDVVRFGR    176

UCH: domain 2 of 2, from 181 to 384: score 38.2, E = 4.4e-13
                   *->gkvsvtyepFldLslpikpkeasdspksLeecLkaFtkeEiLKvieg
                      ++++v+ye+F++L+l+i p+++    ++ e+ L+ F+  Ei+   +
     Y67D2.2   181    KNRTVKYESFTVLTLAI-PNSQMGTSTNTESLLRRFFCSEII---RD 223

                   enkyyCdkc....gkkqeasKklkisrLPpiLtihLkRFsydgetssnim
                        Cdkc+ +++k+q   Kk+ i +LP++L i ++R     ++s+
     Y67D2.2   224 ---AICDKCrasdRKQQGFLKKHGIVKLPQTLMIRIERVGMLPNGSM--- 267

                   KindrvefPleeLDlspyln..............................
                   K+++ v+f +  L l++ + +++++ ++++ ++++ + + ++++++  ++
     Y67D2.2   268 KLSEHVHFGEC-LSLQDVCFrknpkinqksyeesslhwqlpdgtsrvvgg 316

                   ..............................q.k.tnkeraaaeansleee
                    +++++++++ ++++    ++  ++    + ++ ++++r
     Y67D2.2   317 aeetrsrrspihpsqaaifgdlasnyalidGgSfVAERR----------- 355

                   qqsvnadegnnqeeseestksqeegenpptkYeLvaVvvHsGsslsgGHY
                                            e + + Y L aV+ H G ++++GH
     Y67D2.2   356 -------------------------EAQKYAYQLRAVSEHRG-GPYSGHF 379

                   iayik<-*
                   ++y +
     Y67D2.2   380 VTYRR    384

Galactosyl_T_2: domain 1 of 1, from 439 to 455: score 1.7, E = 6.8
                   *->CPersPillLvGpllisfs<-*
                      CP ++P  + +G +lis++
     Y67D2.2   439    CPNSEP--IFSGIFLISVL    455

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