Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y67D8C.5
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Query: Y67D8C.5 CE31665 status:Partially_confirmed TR:Q9GUP2 protein_id:AAG23375.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HECT HECT-domain (ubiquitin-transferase) 537.4 1e-157 1
UBA UBA/TS-N domain 34.8 8.2e-08 1
PUA PUA domain 5.5 7.4 1
CRAL_TRIO_N CRAL/TRIO, N-terminus 4.7 4.3 1
DUF359 Protein of unknown function (DUF359) 2.9 5.4 1
TAFII55_N TAFII55 protein conserved region 2.8 9.7 1
PGK Phosphoglycerate kinase 2.7 6.4 1
GatB_N PET112 family, N terminal region 2.6 5.6 1
MukB MukB N-terminal 2.3 8.1 1
NosD Periplasmic copper-binding protein (NosD) 1.4 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TAFII55_N 1/1 290 318 .. 186 215 .] 2.8 9.7
UBA 1/1 1435 1473 .. 1 45 [] 34.8 8.2e-08
CRAL_TRIO_N 1/1 1640 1653 .. 76 89 .] 4.7 4.3
MukB 1/1 1723 1750 .. 1 22 [. 2.3 8.1
NosD 1/1 2613 2622 .. 321 330 .] 1.4 9.3
DUF359 1/1 2986 2993 .. 1 8 [. 2.9 5.4
PGK 1/1 3558 3569 .. 422 433 .] 2.7 6.4
PUA 1/1 4056 4073 .. 1 18 [. 5.5 7.4
GatB_N 1/1 4156 4168 .. 277 289 .] 2.6 5.6
HECT 1/1 3870 4177 .] 1 358 [] 537.4 1e-157
Alignments of top-scoring domains:
TAFII55_N: domain 1 of 1, from 290 to 318: score 2.8, E = 9.7
*->verdllktieapeVEkEvkrLLrsDeeAvs<-*
+e l+ + ++ +E v++ L+sD eA+
Y67D8C.5 290 DETTLSSLLYSGFIEEIVEM-LKSDREADT 318
UBA: domain 1 of 1, from 1435 to 1473: score 34.8, E = 8.2e-08
*->ideekvkqLreMGGGvfsreeakkALratnnnsDverAvewLleh<-
++e+++ +L+++G fsr+ + AL+ t n ++A+++Ll h
Y67D8C.5 1435 PHEDTIVMLMDLG---FSRDIVLYALESTRN---ADEAANYLLAH 1473
*
Y67D8C.5 - -
CRAL_TRIO_N: domain 1 of 1, from 1640 to 1653: score 4.7, E = 4.3
*->ktlkWRrEfGvnei<-*
+t++WR+E+ + ei
Y67D8C.5 1640 MTEEWRKEHLIAEI 1653
MukB: domain 1 of 1, from 1723 to 1750: score 2.3, E = 8.1
*->miERGK....yrsLt..linWnGFFARt<-*
++ER K+ + y+sL +++i Wn F+A+t
Y67D8C.5 1723 LVERFKsvdyYQSLItrIICWNDFYAKT 1750
NosD: domain 1 of 1, from 2613 to 2622: score 1.4, E = 9.3
*->GGVvDShPLM<-*
GGV+ hPLM
Y67D8C.5 2613 GGVISEHPLM 2622
DUF359: domain 1 of 1, from 2986 to 2993: score 2.9, E = 5.4
*->LPEelRee<-*
LPEe+R+e
Y67D8C.5 2986 LPEEMRAE 2993
PGK: domain 1 of 1, from 3558 to 3569: score 2.7, E = 6.4
*->eLPGVaaLsekk<-*
+LP+V++L++k
Y67D8C.5 3558 QLPAVTVLTDKG 3569
PUA: domain 1 of 1, from 4056 to 4073: score 5.5, E = 7.4
*->glirvdvgavaadfiknG<-*
gl++vd+++ aa++ +G
Y67D8C.5 4056 GLPTVDIDDMAANTDYKG 4073
GatB_N: domain 1 of 1, from 4156 to 4168: score 2.6, E = 5.6
*->yEiqRQvnllerG<-*
yE+ RQ ll ++
Y67D8C.5 4156 YEKLRQSLLLAIR 4168
HECT: domain 1 of 1, from 3870 to 4177: score 537.4, E = 1e-157
*->flvSkemFnpmyglffyspesdRytlyidpnsddkTTLLFPEPLNPf
+++++e Fnp y+lf++ p +d +t i+ s
Y67D8C.5 3870 SVITREIFNPNYALFITAP-GDMVTYMINKASY-------------- 3901
kaneehleyfkfiGrvvGlallhnrLLDlfFarafyKklLrksikfvTTV
+n+ehl yfkf Gr++++++++++ LD++F+rafyK++L+ +++
Y67D8C.5 3902 -INPEHLDYFKFVGRLIAKSVFEHKYLDCYFTRAFYKHILNLPVR----- 3945
PSDVEtsfhDlesvDpelYnsLikiLeNtedKefEevinltdLtfsidle
++Dles+Dp++ +sL +L+N +d + +dLtfs+++e
Y67D8C.5 3946 -------YQDLESEDPAFFKSLDFLLQNPID------DLALDLTFSTEVE 3982
efgndekvSKEYVTVELiPnGrnivvTksNkkEYvhlviqwrlvkrieKQ
efg+ +++ +L+PnGr+i+v++ Nk EYv lv+q++++++i+KQ
Y67D8C.5 3983 EFGVRSVR-------DLKPNGRKIEVNDANKDEYVKLVCQMKMTGSIRKQ 4025
lkAFkeGFsevipeCnlikiFneeELelLigGvEEegdiDvddLksnTeY
l AF+ GF+e+ip+ +li++Fne+ELelLi+G+ +++D+dd nT+Y
Y67D8C.5 4026 LDAFLTGFYEIIPK-DLISMFNEQELELLISGL---PTVDIDDMAANTDY 4071
edESSEGYsedsqvIqWFWeiveefdkeeRakLLQFvTGsprlPlqGFks
+ G+++ s IqWFW+++++f ke++ak+LQFvTG++++PlqGF+s
Y67D8C.5 4072 K-----GFQKTSTHIQWFWRALRSFEKEDKAKFLQFVTGTSKVPLQGFAS 4116
LeGsngipkftiekagtederLPtAhTCfNrLdLPkYsSKeiLrsKLllA
LeG+ng++kf i+ +++ +rLP AhTCfN+LdLP+Y+S+e+Lr+ LllA
Y67D8C.5 4117 LEGMNGVQKFSIHMDSRGGDRLPAAHTCFNQLDLPQYESYEKLRQSLLLA 4166
IeeCgeGFglv<-*
I eC+eGFg++
Y67D8C.5 4167 IRECTEGFGFA 4177
[output cut off at A = 10 top alignments]