Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y69A2AR.4
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Query: Y69A2AR.4 CE29906 locus:smf-3 status:Partially_confirmed TR:Q95XG8 protein_id:AAL27264.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Nramp Natural resistance-associated macrophage pro 718.0 4.2e-212 1
NAM No apical meristem (NAM) protein 4.5 4.5 1
GASA Gibberellin regulated protein 3.9 0.21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GASA 1/1 103 114 .. 98 109 .] 3.9 0.21
NAM 1/1 552 559 .. 127 134 .] 4.5 4.5
Nramp 1/1 170 560 .. 1 414 [] 718.0 4.2e-212
Alignments of top-scoring domains:
GASA: domain 1 of 1, from 103 to 114: score 3.9, E = 0.21
*->nwtThgGgpKCP<-*
n++T +G KCP
Y69A2AR.4 103 NILTMEGEMKCP 114
NAM: domain 1 of 1, from 552 to 559: score 4.5, E = 4.5
*->vMHEYRlt<-*
+MHEY l+
Y69A2AR.4 552 IMHEYKLA 559
Nramp: domain 1 of 1, from 170 to 560: score 718.0, E = 4.2e-212
*->yetdlqAGAqagYkLLWVlLwanimAlLlQrLSArLGvVTGkdLAEv
+e+dlqAGA +kL WVlL+a+im+lLlQrL+ArLGvV+Gk++AE+
Y69A2AR.4 170 IESDLQAGAISYFKLIWVLLVAHIMGLLLQRLAARLGVVSGKHMAEI 216
CreeYPrpvriiLWlmaElAIIAtDiaEVIGTAIAlklLfkGriPLwgGV
+ +YP+ +r++LW ++E AI+++D++EVIGTAI+++lL++G+iPLw+GV
Y69A2AR.4 217 AFSYYPKIPRLVLWMLVESAIVGSDMQEVIGTAISFYLLSNGVIPLWAGV 266
lITivDtflfLflqkPgSryGiRkLEavvglLilvmAisFavelfvvkPs
lITi Dtf+fLfl+ +yG+Rk+Ea++ +Li+ mAi+F++e++v+ P+
Y69A2AR.4 267 LITICDTFTFLFLE----KYGVRKFEAFFCFLITCMAITFGYEFGVSAPD 312
akeVlkGlFvPslsgfgsealllAiGIlGAtVMPHnlYLHSaLVqsRlvd
a+++++G+FvP++ g++ + +++ ++I+GA++MPHn+YLHSaLV+sR+vd
Y69A2AR.4 313 AGKMFSGMFVPWCNGCDNNMVMQGVAIIGAVIMPHNFYLHSALVKSRRVD 362
rdakrGnYtvaeesDekkvNYRPsleaikealrYfliEsaIALftvAffv
r++ + ++ ea++Yf+iEsa+ALf v+f++
Y69A2AR.4 363 RRRAE---------------------KVTEANKYFFIESAFALF-VSFII 390
NlavliVaAagfygstnadvadlcsayslssdAdi....fP.nnelvnvD
N+ v++V+A+g+yg+tn+d d c +++ d + +fP nn + D
Y69A2AR.4 391 NTLVISVFAQGMYGKTNQDIRDTCYNNTHNGMPDFykveFPaNNDAAQSD 440
iYkgglylglsfgavaaAatiFavGLLAsGQSStivGTyAGQfVMeGFLn
iY +g++lg++fg +A++++avG+LA+GQSSt++GTyAGQf MeGF++
Y69A2AR.4 441 IYHAGIFLGCTFG--IFALYVWAVGILAAGQSSTMTGTYAGQFAMEGFIQ 488
wklppWlRrliTRsiAIiPtLivalfgggesdltraLvlsqVvLSfqLPF
+klp+W+R liTRs AI+PtL+v++f+gg +++ +++++++++ +qLPF
Y69A2AR.4 489 IKLPQWKRILITRSLAILPTLAVVIFSGGIDNISSLNDFLNCLQLIQLPF 538
AliPLitFTSsrkiMgefvnsk<-*
AliP +tF+S+r+iM+e + +
Y69A2AR.4 539 ALIPVLTFVSDRNIMHEYKLAS 560