Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y69H2.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y69H2.5 CE22823 status:Partially_confirmed TR:Q9U1U5 protein_id:CAB63402.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TIL Trypsin Inhibitor like cysteine rich domain 65.8 2.5e-19 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TIL 1/1 74 128 .. 1 67 [] 65.8 2.5e-19
Alignments of top-scoring domains:
TIL: domain 1 of 1, from 74 to 128: score 65.8, E = 2.5e-19
*->CpaneqyteCgpsCepsCsnpdgplettppCegtSpkvPstCkegCv
C +ne +++Cg++Cep+C+ p t++ C+ ++C++gC+
Y69H2.5 74 CKENESFQTCGTACEPTCGLP-----TPTFCT-------LQCVMGCQ 108
CqpGyVrnndgdkCVprseC<-*
C++G+ r+ ++++CV++ +C
Y69H2.5 109 CNSGFFRRTSDNRCVEQKDC 128