Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y69H2.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y69H2.5  CE22823    status:Partially_confirmed TR:Q9U1U5 protein_id:CAB63402.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
TIL      Trypsin Inhibitor like cysteine rich domain     65.8    2.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIL        1/1      74   128 ..     1    67 []    65.8  2.5e-19

Alignments of top-scoring domains:
TIL: domain 1 of 1, from 74 to 128: score 65.8, E = 2.5e-19
                   *->CpaneqyteCgpsCepsCsnpdgplettppCegtSpkvPstCkegCv
                      C +ne +++Cg++Cep+C+ p     t++ C+       ++C++gC+
     Y69H2.5    74    CKENESFQTCGTACEPTCGLP-----TPTFCT-------LQCVMGCQ 108

                   CqpGyVrnndgdkCVprseC<-*
                   C++G+ r+ ++++CV++ +C
     Y69H2.5   109 CNSGFFRRTSDNRCVEQKDC    128



[DB home][top]