hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y69H2.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y69H2.6  CE22824  locus:ubc-19  status:Partially_confirmed TR:Q9U1U4 protein_id:CAB63403.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
UQ_con   Ubiquitin-conjugating enzyme                   108.5      1e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UQ_con     1/1      17   169 ..     1   181 []   108.5    1e-29

Alignments of top-scoring domains:
UQ_con: domain 1 of 1, from 17 to 169: score 108.5, E = 1e-29
                   *->ssaatkRLqkElkelqkdppdpkpgisaspvddrddednlfeWeatl
                      +   ++ L+ E+ e+++    p +gi +sp+ +     n f W +
     Y69H2.6    17    NILKEQALAAEFVEVCR---APIDGIFVSPSAN-----NKFLWFG-- 53

                   iiGPpgTpYegGvFkldieFPedYPfkPPkvrfvtpgevkFl.TkiyHPN
                   +i  + +++ gG+F+++i++P ++P+++   r      v+F+++  +HP
     Y69H2.6    54 VIFVRKGIFGGGIFRFNIHIPLEFPDASDLPR------VIFEqSNLFHPL 97

                   vdsenGeiCLsILkdpgDDPgYelhperWsPa.ltlrsvLllsiqsLLse
                   + +++ e+CL+ + +           e+W+ ++++lr vL + ++s+ s+
     Y69H2.6    98 ICTKSKELCLNRSFP-----------EGWKKEkHSLRRVLVVLQRSFYSY 136

                   .PnpesPlnaeaGAklykknrGereefekkvrarvek<-*
                   + +++++ n+ea   lyk++   r +f+++++++ve
     Y69H2.6   137 dVDTDKCINPEA-SVLYKEH---RDKFREIAKECVEA    169

[DB home][top]