Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y70C5A.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y70C5A.2 CE16671 status:Partially_confirmed TR:O62495 protein_id:CAB16532.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FTH FTH domain 132.1 1e-35 2
F-box F-box domain 18.4 0.0038 1
7tm_5 7TM chemoreceptor 18.1 3.6e-05 1
FtsX Predicted permease 7.1 1.2 1
ATP-synt_8 ATP synthase protein 8 5.0 1.4 1
MS_channel Mechanosensitive ion channel 3.6 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FtsX 1/1 166 202 .. 122 158 .] 7.1 1.2
ATP-synt_8 1/1 159 207 .. 4 51 .. 5.0 1.4
7tm_5 1/1 154 270 .. 190 341 .] 18.1 3.6e-05
FTH 1/2 441 551 .. 1 107 [. 15.5 0.0073
F-box 1/1 658 696 .. 10 46 .] 18.4 0.0038
MS_channel 1/1 962 983 .. 192 214 .] 3.6 9.3
FTH 2/2 834 986 .. 1 153 [] 119.0 9e-32
Alignments of top-scoring domains:
FtsX: domain 1 of 1, from 166 to 202: score 7.1, E = 1.2
*->alplslsp.vvllalllalligllagllParrAarldP<-*
++ + +s+ +l+++l+ ig l+g++ +++++++++
Y70C5A.2 166 LIISIISIiFLLITFLIF-SIGYLSGAYHILKLSKMKI 202
ATP-synt_8: domain 1 of 1, from 159 to 207: score 5.0, E = 1.4
*->LnpspWfliflsswltLliilqlKilshtfpnnpsl..kktklkkkp
L+++ W li+ ++++++l+i l i+s + + + k +k+k+ +
Y70C5A.2 159 LDTNSWRLIISIISIIFLLITFL-IFSIGYLSGAYHilKLSKMKISK 204
npW<-*
++W
Y70C5A.2 205 KFW 207
7tm_5: domain 1 of 1, from 154 to 270: score 18.1, E = 3.6e-05
*->pgffvlsidsttwityflisivfliliviiqiiffvlhllifyylkq
p+ff l+++s+ ++isi+++i+++i++ if +++l+ y++ +
Y70C5A.2 154 PEFFFLDTNSW----RLIISIISIIFLLITFLIFSIGYLSGAYHILK 196
lkelrstmSkkTrklQkkFfialiviQvsiPllvilpptKliPlgfiylv
l+++ ++Skk k Q F++ l +iQv+ ++++l ++P+ ++l+
Y70C5A.2 197 LSKM--KISKKFWKIQTGFLFLL-GIQVTLLFCFLL----FLPI--CFLA 237
fsilfggntYynQginleeynmalnNlafiigcislHGllSTcsivmllv
+ +g + + l++i +i +H ++ST i+ +l
Y70C5A.2 238 IK-APG------S---------ESTSLTIIL-FIGHHATIST--IIFILA 268
HkPYR<-*
H R
Y70C5A.2 269 H---R 270
FTH: domain 1 of 2, from 441 to 551: score 15.5, E = 0.0073
*->rekivesleevLkslkkclhVkkislsgfsfsevasILpyFdagtLe
++ +++l+++L++++++l + i l s+v+ +Lp d L+
Y70C5A.2 441 LNDAYQWLVNFLRNQGRKLRTTGIFLVVEDASQVLLVLPLVDQNILK 487
eIel...kssssseiddferiveLeQWKnAKslkiessvv.ssfpIEhLf
++++ + + +i+d +i++Le n l+i++++ + s+p +hLf
Y70C5A.2 488 FFVIssiYKQGKKSIIDVQEIINLEILNNITGLRIRDCYMsPSTPLQHLF 537
HFeeFditldsfsv<-*
F +++ +d+ s+
Y70C5A.2 538 KFPGVSVMMDKVSM 551
F-box: domain 1 of 1, from 658 to 696: score 18.4, E = 0.0038
*->llleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kll<-*
++++Il ++ + +l++VS+++r++vd l++ +++
Y70C5A.2 658 IMEHILGKVGSLTIQTLRKVSHKTRQVVDFLnPDSkIYA 696
MS_channel: domain 1 of 1, from 962 to 983: score 3.6, E = 9.3
*->svrselnlriIkkaleengIeip<-*
++++e+n ++++eeng+ ++
Y70C5A.2 962 KIVFEVNDM-NENIFEENGLGFA 983
FTH: domain 2 of 2, from 834 to 986: score 119.0, E = 9e-32
*->rekivesleevLkslkkclhVkkislsgfsfsevasILpyFdagtLe
++++ le L+sl+k+l+Vkk+s+++ + ++v IL+++d+ L
Y70C5A.2 834 ASTYYQLLEYSLESLGKLLPVKKLSMQTEHEEDVFKILKNLDPAELN 880
eIel...kssssseiddferiveLeQWKnAKslkiessvvssfpIEhLfH
Ie++++kss ++ d+++i L+QW nAK+l +e + ++ +IE L+H
Y70C5A.2 881 VIEIqkpKSSLIYRSLDINEISILNQWNNAKELLCEPPIAVY-QIECLSH 929
FeeFditldsfsveDAiKIRDiLlksstFescti.Fe.sdvfefsnsnpi
F+ +d++l ++ +D++++++ +l+s tF +c+i Fe +d ++ i
Y70C5A.2 930 FSMIDVHLFTLLLQDMVYLKNKFLSSRTFTKCKIvFEvNDM-----NENI 974
eiarvFd.Pdye<-*
+ ++ ++ + +
Y70C5A.2 975 FEENGLGfAHLR 986