Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71F9AL.4
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Query: Y71F9AL.4 CE25558 protein-tyrosine phosphatase status:Partially_confirmed TR:Q9N4H5 protein_id:AAF36005.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 247.1 2.4e-70 1
DSPc Dual specificity phosphatase, catalyti 13.7 0.015 1
Transposase_20 Transposase IS116/IS110/IS902 family 4.0 6.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DSPc 1/1 356 382 .. 99 125 .. 13.7 0.015
Transposase_20 1/1 381 403 .. 92 113 .] 4.0 6.2
Y_phosphatase 1/1 197 428 .. 1 274 [] 247.1 2.4e-70
Alignments of top-scoring domains:
DSPc: domain 1 of 1, from 356 to 382: score 13.7, E = 0.015
*->IdkarqkggkVLVHCqAGiSRSAtlii<-*
+++++++ ++V HC AG+ R++tl++
Y71F9AL.4 356 LSAVKKDKKPVIAHCSAGVGRTGTLAL 382
Transposase_20: domain 1 of 1, from 381 to 403: score 4.0, E = 6.2
*->aLymgAlvalrhpe.dpgsrayy<-*
aL++++ +alrhp+++ + +++
Y71F9AL.4 381 ALIESMIAALRHPRkQNVKDSFV 403
Y_phosphatase: domain 1 of 1, from 197 to 428: score 247.1, E = 2.4e-70
*->NkeKNRykdilpyDhtRVkLk.egsDYINAnyidgpqsrtlvvykkp
k+ NRy++i + D+ R L ++ ++YI+An++++ +kp
Y71F9AL.4 197 FKDLNRYPNIQCWDRGRFTLAgDENFYIHANFVKI--------CTKP 235
kayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqYW
++ +TQgP++nT+ +FW+M ++t+I+ML+ +vE+g eK Ca+Y
Y71F9AL.4 236 ERFVCTQGPMENTCTHFWQMALSLGSTSIIMLCGFVEDGS--EK-CAKYI 282
Pee.gg.eeggsltyGditVtlvseekkddddytvRtleltn.gdeskne
+ g+ + ++ +y +++ +++ k +d++t R+l++ + +
Y71F9AL.4 283 SDIvGFvNLEDHRVYTEYCTEIEIGGK-SKDKITHRVLKVVVkAT----- 326
akqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqene
g++ ++ hy++ +WPDhg P+s + l++l v+k ++
Y71F9AL.4 327 -------GQESKLNHYQWASWPDHGMPDS-CDTALRLLSAVKKDKK---- 364
sgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvid
P++ HCSAG+GRTGt+++i+ ++ l++ + +
Y71F9AL.4 365 ----------------PVIAHCSAGVGRTGTLALIESMIAALRHPRKQ-N 397
ifdivkelRsqRpgmVQteeQYiFiydaile<-*
++d lR+ R+ +VQt+ QY++ +++le
Y71F9AL.4 398 VKDSFVLLRKDRARSVQTFPQYVYALRCVLE 428