Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71F9AL.17
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Query: Y71F9AL.17 CE29136 coatomer, alpha chain status:Confirmed TR:Q9N4H7 protein_id:AAF36010.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Coatomer_WDAD Coatomer WD associated region 885.0 2.3e-262 1
WD40 WD domain, G-beta repeat 204.5 1.7e-57 7
Ham1p_like Ham1 family 2.9 6.3 1
Nab1 Conserved region in Nab1 2.2 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/7 1 39 [. 1 39 [] 17.7 0.003
WD40 2/7 43 81 .. 1 39 [] 42.5 2.7e-10
WD40 3/7 85 123 .. 1 39 [] 38.0 5.2e-09
WD40 4/7 127 165 .. 1 39 [] 46.1 2.6e-11
WD40 5/7 197 235 .. 1 39 [] 43.9 1.1e-10
WD40 6/7 241 279 .. 1 39 [] 32.5 2e-07
WD40 7/7 283 317 .. 1 35 [. 0.6 2.3e+02
Nab1 1/1 502 528 .. 34 60 .. 2.2 8.8
Ham1p_like 1/1 710 720 .. 1 11 [. 2.9 6.3
Coatomer_WDAD 1/1 340 787 .. 1 475 [] 885.0 2.3e-262
Alignments of top-scoring domains:
WD40: domain 1 of 7, from 1 to 39: score 17.7, E = 0.003
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++l ++ ++ v ++f+p +p+++++ + g i lWd
Y71F9AL.17 1 MSLLIKFeSKSARVKGISFHPT-RPWVLTSLHSGVIQLWD 39
WD40: domain 2 of 7, from 43 to 81: score 42.5, E = 2.7e-10
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ +l ++ H +pv+ ++f++d +p+++sg++D +ik+W+
Y71F9AL.17 43 CVLLEKFdEHDGPVRGICFHHD-QPIFVSGGDDYKIKVWN 81
WD40: domain 3 of 7, from 85 to 123: score 38.0, E = 5.2e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ c+ tl gH ++++ f++ +p+++s+S+D t+++W+
Y71F9AL.17 85 KRCIFTLlGHLDYIRTTFFHHK-YPWIISASDDQTVRIWN 123
WD40: domain 4 of 7, from 127 to 165: score 46.1, E = 2.6e-11
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ +a+l+gH+++v+c f+p ++as+S D t+++Wd
Y71F9AL.17 127 RNSIAILtGHNHYVMCAQFHPT-EDLVASASLDQTVRVWD 165
WD40: domain 5 of 7, from 197 to 235: score 43.9, E = 1.1e-10
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++++l+gH +v+ vaf++ p+l+sgS+D+ +k+W
Y71F9AL.17 197 AVVKHVLeGHDRGVNWVAFHHT-NPILVSGSDDRQVKIWR 235
WD40: domain 6 of 7, from 241 to 279: score 32.5, E = 2e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
l + +gH + v++v f+p+ +++s S+D++i++Wd
Y71F9AL.17 241 AWELDSCrGHYNNVSSVIFHPN-ADLILSNSEDKSIRVWD 279
WD40: domain 7 of 7, from 283 to 317: score 0.6, E = 2.3e+02
*->geclatl.gHtspvtcvafspdsgpylasgSrDgti<-*
++ l+++++ + + +a +p+ +++a g ++g +
Y71F9AL.17 283 RTSLHVFrHENERFWVLAAHPS-LNMFAAGHDNGMV 317
Nab1: domain 1 of 1, from 502 to 528: score 2.2, E = 8.8
*->KsEELAALssqqtEKvmAKqmElLCaq<-*
Ks E AAL s+ t + +++E+LC q
Y71F9AL.17 502 KSMEFAALLSKHTLTLVNRKLEILCTQ 528
Ham1p_like: domain 1 of 1, from 710 to 720: score 2.9, E = 6.3
*->lvfATgNpgKl<-*
l+f+TgN Kl
Y71F9AL.17 710 LYFVTGNTDKL 720
Coatomer_WDAD: domain 1 of 1, from 340 to 787: score 885.0, E = 2.3e-262
*->eseiqqadfktikdsleevtDGevlpLrvkelgSleiypqslsYNPn
++i+++d++t+kd+ ++++Lr+++++ +++++sls+NP+
Y71F9AL.17 340 GQQIRKLDLTTNKDV-------ALCKLRYPQPF--MQPYYSLSFNPA 377
grfVlvcgRtsdgEygiYtllalrkkafGaaeeFVWapdskeyAvreavf
+ ++l+++Rt++++ ++++l++++++++G++e + + ++++++a +
Y71F9AL.17 378 EGTFLLTSRTHNKDLCAFELYKVASNSDGTTE-----AACVKSTGINALW 422
vaRnrFknFkkktqsvsvrdlankitkgillgvksvddIfFagwgsllLi
vaRnrF++++k+ q+vs+rdl+nk ++++++++++vddIf+ag+g+llL+
Y71F9AL.17 423 VARNRFAVLDKA-QNVSLRDLTNKELRKLENINTAVDDIFYAGTGMLLLR 471
rrieVtlkdVQqkdsgelVaisnvknGDEASFYVlwsnddqvvallskHt
+++ +l+dVQqk ++++V++s+v+ YV+ws++++++allskHt
Y71F9AL.17 472 NDDGLQLFDVQQKIVTASVKVSKVR-------YVIWSKSMEFAALLSKHT 514
itieegkleafevlhEvterVKSGaWdgdgViiyttlNhIkYyvgNGdig
+t++++kle++++++E ++rVKSGaWd+d+V++ytt+NhIkY++++Gd+g
Y71F9AL.17 515 LTLVNRKLEILCTQQE-STRVKSGAWDDDSVFLYTTSNHIKYAINSGDCG 563
iIrtLDrplYLlgvlgkdnrVYClDRelnvisytIdlseyeFKtAlvRrd
i+rtLD+plY+l ++g n +YCl+R++++++++Id+s+y+FK+Al++++
Y71F9AL.17 564 IVRTLDLPLYILAIRG--NVLYCLNRDATPVEVPIDNSDYKFKLALINKR 611
fdevlelvlptsplvgrqsiihYLqkkGYpEiALqfvkDpdtRFeLALel
+dev++ ++++++lvg qsii+YL+kkGYpEiAL+fvkD++tRF+LA+e+
Y71F9AL.17 612 IDEVVN-MVRSANLVG-QSIIGYLEKKGYPEIALHFVKDEKTRFGLAIEC 659
GnLeiAlelAkeldsedkWkrLGeeALlqGNfqlveeayqrakdfekLsf
GnLeiAle+Ak+ld++++W++LGe+ALlqGN+q+ve++yqr+k+fekLsf
Y71F9AL.17 660 GNLEIALEAAKKLDEPAVWEALGETALLQGNHQIVEMSYQRTKNFEKLSF 709
LYlitGdaekLsKlakiAeargdfngaFqnalylGdveervdiLietGrl
LY++tG+++kL+K++kiA+ar+d++g+Fq+aly+Gdveerv++L+++G++
Y71F9AL.17 710 LYFVTGNTDKLVKMMKIAQARNDAHGHFQTALYTGDVEERVKVLRNCGQT 759
PlAyltArThGldseaesiveewkekls<-*
+lAyl+A+ThG+++eae++++e+++ ++
Y71F9AL.17 760 SLAYLAAATHGYSAEAEELKAELESRQQ 787
[output cut off at A = 10 top alignments]