Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71F9AM.4
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Query: Y71F9AM.4 CE26779 status:Partially_confirmed TR:Q95XT4 protein_id:AAK66026.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sec34 Sec34-like family 82.2 5.9e-23 1
spectrin Spectrin repeat 5.7 4.2 1
Defensin_propep Defensin propeptide 5.1 5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Defensin_propep 1/1 6 14 .. 1 9 [. 5.1 5
spectrin 1/1 47 92 .. 17 63 .. 5.7 4.2
Sec34 1/1 78 196 .. 29 147 .. 82.2 5.9e-23
Alignments of top-scoring domains:
Defensin_propep: domain 1 of 1, from 6 to 14: score 5.1, E = 5
*->MRTLaLLaA<-*
MRT+ LLaA
Y71F9AM.4 6 MRTVELLAA 14
spectrin: domain 1 of 1, from 47 to 92: score 5.7, E = 4.2
*->isekeallssedygkDlesvqaLlkkHealeaelaaheqdrvkqlne
i e+ l++ +++++++++ + +k++++l++ +++ + + +++l e
Y71F9AM.4 47 IKKREKDLAELQFPPEITAIRSNMKRFRDLQKQIDNSK-ATMNELRE 92
<-*
Y71F9AM.4 - -
Sec34: domain 1 of 1, from 78 to 196: score 82.2, E = 5.9e-23
*->qQvnealetLesLqeqyefVskKtstLheACEqLlkEqerLsElAee
+Q+++ t+++L+e ye+Vs t Lh+AC++ l Eq Ls +
Y71F9AM.4 78 KQIDNSKATMNELREAYESVSSRTCSLHDACDRALAEQTSLSTGSQL 124
IrkkLtYFaeLEeLNrkLrsPtlsvasesFkehLtkLdeCitYieenpdF
I+ L YF + + +kL l v sF L +deC+tY+ +p++
Y71F9AM.4 125 IKTNLYYFKQADAIMKKLSVAKLMVTGHSFAAILVSIDECLTYLRAHPEY 174
kdspaYlvkYkqcLSkAlglvk<-*
k+s aY k+ qcLS+A+ v+
Y71F9AM.4 175 KESEAYISKFEQCLSRAMTWVR 196