Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71G12B.27
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Query: Y71G12B.27 CE22913 status:Partially_confirmed TR:Q95XM4 protein_id:AAK73928.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CKS Cyclin-dependent kinase regulatory subunit 157.2 2.8e-43 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CKS 1/1 1 72 [. 1 72 [] 157.2 2.8e-43
Alignments of top-scoring domains:
CKS: domain 1 of 1, from 1 to 72: score 157.2, E = 2.8e-43
*->skqiyYSdkYyDdeFEYRHVvLPkdvaKliPknrLlsEeEWRsLGvq
++iyYS++Y+Dde+EYRHV+LP +v++ +Pk rLlsE+EWR Gvq
Y71G12B.27 1 MEDIYYSPRYEDDEYEYRHVILPQAVSRKVPKGRLLSEAEWRRAGVQ 47
QSqGWvhYmiHkPEPHiLLFrRpke<-*
QS GW+hYm+H+PE HiLLFrR ++
Y71G12B.27 48 QSLGWEHYMVHNPEKHILLFRRKRH 72