Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71G12B.4
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Query: Y71G12B.4 CE26253 status:Confirmed TR:Q95XM2 protein_id:AAK73930.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cu2_monooxygen Copper type II ascorbate-dependent mon 167.1 2.7e-49 1
Cu2_monoox_C Copper type II ascorbate-dependent mon 135.8 1.6e-37 1
Glyco_hydro_2 Glycosyl hydrolases family 2, immunogl 3.3 4.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_hydro_2 1/1 121 127 .. 130 136 .] 3.3 4.3
Cu2_monooxygen 1/1 27 152 .. 22 152 .] 167.1 2.7e-49
Cu2_monoox_C 1/1 165 322 .. 1 170 [] 135.8 1.6e-37
Alignments of top-scoring domains:
Glyco_hydro_2: domain 1 of 1, from 121 to 127: score 3.3, E = 4.3
*->pqkVGFR<-*
pq+VGFR
Y71G12B.4 121 PQDVGFR 127
Cu2_monooxygen: domain 1 of 1, from 27 to 152: score 167.1, E = 2.7e-49
*->IlmpgvviPskeDtYlCtsyklpfdterrhyIvkFePlAtkGnastv
I+mpg v P+ D YlCts++l +d+e+ y +F++l t +t+
Y71G12B.4 27 IRMPG-VVPEA-DSYLCTSLEL-SDQEN--YLTGFKALTT---KGTA 65
HHMLLFgCegEePasedkiWnCdemkk.......PcgkkscskILyAWAr
HH+LLFgCe eP+s++ W+C+em+k++++ ++ ++++s+ ILyAWA+
Y71G12B.4 66 HHILLFGCE--EPGSDELVWDCGEMNKpddemprAPTCGSKPAILYAWAL 113
nApptvLPkeVGlriGgkgsikYLVLQVHYghapsfqdgek<-*
+App++LP +VG+r+Gg++ i+ LV QVHY s+q+
Y71G12B.4 114 DAPPLELPQDVGFRVGGDSNIRHLVMQVHY--MHSKQEPDE 152
Cu2_monoox_C: domain 1 of 1, from 165 to 322: score 135.8, E = 1.6e-37
*->kflAGimglyLlmsddtaIPPgktAfpldisCkfnctksALPesGIh
++lA + ++l+++++ P +kt + +++C+ ++ + +h
Y71G12B.4 165 PKLA---A-TMLLVTGGTLPRNKT-ESFETACMIEEDVV------MH 200
pFAyRvHTHllGrvVsGyrvR.....ngqwleiGkrdPqyPpHFQaFypv
pFAyR+HTH G+ VsG +v ++++++ +w +iG+rdPq+ Q+F pv
Y71G12B.4 201 PFAYRTHTHRHGKEVSGWLVKedqkhEDHWKLIGRRDPQLA---QMFVPV 247
kn.kveVkpGDiLaarCtYdstdrtkttsiGatisDEMCNfYiMYYpdsk
+++ +++ +GD arC + ++ s+Gat +DEMCNfYiMY +d +
Y71G12B.4 248 EDqAMTIQQGDMVTARCILQNNE-NRDISMGATEEDEMCNFYIMYWTDGE 296
lDnevpksacsgdtlpkyFisnfpsdvsv<-*
+ +c + ++p+y + + + +++
Y71G12B.4 297 V---MQDNTCYSPGAPDYKWAREADLNHI 322